Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13825

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13815 and RS_RS13820 are separated by 74 nucleotidesRS_RS13820 and RS_RS13825 are separated by 20 nucleotidesRS_RS13825 and RS_RS13830 are separated by 58 nucleotidesRS_RS13830 and RS_RS13835 are separated by 87 nucleotides RS_RS13815: RS_RS13815 - transcriptional regulator GcvA, at 2,973,271 to 2,974,197 _RS13815 RS_RS13820: RS_RS13820 - VOC family protein, at 2,974,272 to 2,974,697 _RS13820 RS_RS13825: RS_RS13825 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 2,974,718 to 2,975,467 _RS13825 RS_RS13830: RS_RS13830 - DUF937 domain-containing protein, at 2,975,526 to 2,976,089 _RS13830 RS_RS13835: RS_RS13835 - hypothetical protein, at 2,976,177 to 2,976,773 _RS13835 Position (kb) 2974 2975 2976Strain fitness (log2 ratio) -2 -1 0 1at 2974.067 kb on - strand, within RS_RS13815at 2974.069 kb on + strand, within RS_RS13815at 2974.069 kb on + strand, within RS_RS13815at 2974.235 kb on - strandat 2974.354 kb on - strand, within RS_RS13820at 2974.428 kb on + strand, within RS_RS13820at 2974.428 kb on + strand, within RS_RS13820at 2974.429 kb on - strand, within RS_RS13820at 2974.429 kb on - strand, within RS_RS13820at 2974.534 kb on - strand, within RS_RS13820at 2974.654 kb on - strand, within RS_RS13820at 2974.798 kb on + strand, within RS_RS13825at 2975.373 kb on - strand, within RS_RS13825at 2975.801 kb on + strand, within RS_RS13830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,974,067 - RS_RS13815 0.86 -0.2
2,974,069 + RS_RS13815 0.86 -0.8
2,974,069 + RS_RS13815 0.86 -0.9
2,974,235 - -0.5
2,974,354 - RS_RS13820 0.19 -0.4
2,974,428 + RS_RS13820 0.37 +0.1
2,974,428 + RS_RS13820 0.37 -0.4
2,974,429 - RS_RS13820 0.37 +0.8
2,974,429 - RS_RS13820 0.37 +0.4
2,974,534 - RS_RS13820 0.62 -0.8
2,974,654 - RS_RS13820 0.90 -0.2
2,974,798 + RS_RS13825 0.11 +0.8
2,975,373 - RS_RS13825 0.87 +0.7
2,975,801 + RS_RS13830 0.49 -2.0

Or see this region's nucleotide sequence