Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS12200

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS12190 and RS_RS12195 are separated by 74 nucleotidesRS_RS12195 and RS_RS12200 are separated by 136 nucleotidesRS_RS12200 and RS_RS12205 are separated by 10 nucleotides RS_RS12190: RS_RS12190 - NAD(P)-dependent oxidoreductase, at 2,633,842 to 2,634,738 _RS12190 RS_RS12195: RS_RS12195 - tRNA-Leu, at 2,634,813 to 2,634,897 _RS12195 RS_RS12200: RS_RS12200 - MarR family transcriptional regulator, at 2,635,034 to 2,635,453 _RS12200 RS_RS12205: RS_RS12205 - CBS domain-containing protein, at 2,635,464 to 2,637,263 _RS12205 Position (kb) 2635 2636Strain fitness (log2 ratio) -2 -1 0 1at 2634.122 kb on + strand, within RS_RS12190at 2634.966 kb on + strandat 2634.990 kb on + strandat 2635.451 kb on + strandat 2635.452 kb on - strandat 2636.232 kb on + strand, within RS_RS12205

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,634,122 + RS_RS12190 0.31 +0.1
2,634,966 + -0.4
2,634,990 + -0.4
2,635,451 + +0.6
2,635,452 - -0.3
2,636,232 + RS_RS12205 0.43 -2.3

Or see this region's nucleotide sequence