Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS11155

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS11150 and RS_RS11155 are separated by 58 nucleotidesRS_RS11155 and RS_RS11160 overlap by 4 nucleotidesRS_RS11160 and RS_RS11165 are separated by 332 nucleotides RS_RS11150: RS_RS11150 - 1-deoxy-D-xylulose-5-phosphate synthase, at 2,408,516 to 2,410,426 _RS11150 RS_RS11155: RS_RS11155 - polyprenyl synthetase family protein, at 2,410,485 to 2,411,384 _RS11155 RS_RS11160: RS_RS11160 - exodeoxyribonuclease 7 small subunit, at 2,411,381 to 2,411,665 _RS11160 RS_RS11165: RS_RS11165 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 2,411,998 to 2,413,095 _RS11165 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -2 -1 0 1at 2410.464 kb on - strandat 2411.702 kb on - strandat 2411.813 kb on + strandat 2411.833 kb on + strandat 2411.834 kb on - strandat 2412.061 kb on + strandat 2412.122 kb on - strand, within RS_RS11165at 2412.236 kb on + strand, within RS_RS11165at 2412.236 kb on + strand, within RS_RS11165at 2412.237 kb on - strand, within RS_RS11165at 2412.316 kb on + strand, within RS_RS11165at 2412.316 kb on + strand, within RS_RS11165at 2412.316 kb on + strand, within RS_RS11165at 2412.317 kb on - strand, within RS_RS11165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,410,464 - -0.8
2,411,702 - -0.7
2,411,813 + -2.2
2,411,833 + +0.7
2,411,834 - +0.0
2,412,061 + +0.1
2,412,122 - RS_RS11165 0.11 +0.4
2,412,236 + RS_RS11165 0.22 +0.3
2,412,236 + RS_RS11165 0.22 -1.0
2,412,237 - RS_RS11165 0.22 -1.3
2,412,316 + RS_RS11165 0.29 +0.0
2,412,316 + RS_RS11165 0.29 -2.7
2,412,316 + RS_RS11165 0.29 -1.6
2,412,317 - RS_RS11165 0.29 -1.8

Or see this region's nucleotide sequence