Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10365

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10355 and RS_RS10360 are separated by 65 nucleotidesRS_RS10360 and RS_RS10365 are separated by 101 nucleotidesRS_RS10365 and RS_RS10370 are separated by 17 nucleotides RS_RS10355: RS_RS10355 - preprotein translocase subunit SecG, at 2,236,359 to 2,236,706 _RS10355 RS_RS10360: RS_RS10360 - triose-phosphate isomerase, at 2,236,772 to 2,237,518 _RS10360 RS_RS10365: RS_RS10365 - NAD(P)H quinone oxidoreductase, at 2,237,620 to 2,238,624 _RS10365 RS_RS10370: RS_RS10370 - haloacid dehalogenase-like hydrolase, at 2,238,642 to 2,239,592 _RS10370 Position (kb) 2237 2238 2239Strain fitness (log2 ratio) -2 -1 0 1at 2237.562 kb on + strandat 2237.622 kb on - strandat 2237.942 kb on + strand, within RS_RS10365at 2237.942 kb on + strand, within RS_RS10365at 2237.943 kb on - strand, within RS_RS10365at 2238.599 kb on + strandat 2238.600 kb on - strandat 2238.643 kb on + strandat 2238.644 kb on - strandat 2238.889 kb on + strand, within RS_RS10370at 2238.889 kb on + strand, within RS_RS10370at 2238.956 kb on - strand, within RS_RS10370at 2238.956 kb on - strand, within RS_RS10370at 2239.087 kb on + strand, within RS_RS10370at 2239.087 kb on + strand, within RS_RS10370at 2239.220 kb on - strand, within RS_RS10370at 2239.220 kb on - strand, within RS_RS10370at 2239.220 kb on - strand, within RS_RS10370at 2239.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,237,562 + -0.3
2,237,622 - +0.4
2,237,942 + RS_RS10365 0.32 +0.4
2,237,942 + RS_RS10365 0.32 +0.4
2,237,943 - RS_RS10365 0.32 -2.5
2,238,599 + -0.9
2,238,600 - +0.4
2,238,643 + +0.4
2,238,644 - -0.4
2,238,889 + RS_RS10370 0.26 -0.6
2,238,889 + RS_RS10370 0.26 -1.3
2,238,956 - RS_RS10370 0.33 +0.4
2,238,956 - RS_RS10370 0.33 -0.3
2,239,087 + RS_RS10370 0.47 -1.0
2,239,087 + RS_RS10370 0.47 -0.9
2,239,220 - RS_RS10370 0.61 -1.0
2,239,220 - RS_RS10370 0.61 +0.4
2,239,220 - RS_RS10370 0.61 -0.0
2,239,523 - +0.1

Or see this region's nucleotide sequence