Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS09935

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS09930 and RS_RS09935 are separated by 94 nucleotidesRS_RS09935 and RS_RS09940 are separated by 72 nucleotidesRS_RS09940 and RS_RS09945 are separated by 86 nucleotides RS_RS09930: RS_RS09930 - amidophosphoribosyltransferase, at 2,150,306 to 2,151,841 _RS09930 RS_RS09935: RS_RS09935 - colicin V biosynthesis protein, at 2,151,936 to 2,152,433 _RS09935 RS_RS09940: RS_RS09940 - SPOR domain-containing protein, at 2,152,506 to 2,153,327 _RS09940 RS_RS09945: RS_RS09945 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,153,414 to 2,154,712 _RS09945 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -2 -1 0 1at 2151.941 kb on - strandat 2151.941 kb on - strandat 2152.219 kb on - strand, within RS_RS09935at 2152.302 kb on - strand, within RS_RS09935at 2152.308 kb on + strand, within RS_RS09935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,151,941 - -0.1
2,151,941 - +1.0
2,152,219 - RS_RS09935 0.57 -1.8
2,152,302 - RS_RS09935 0.73 -0.7
2,152,308 + RS_RS09935 0.75 +1.0

Or see this region's nucleotide sequence