Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01565

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01560 and RS_RS01565 are separated by 229 nucleotidesRS_RS01565 and RS_RS01570 are separated by 44 nucleotides RS_RS01560: RS_RS01560 - teicoplanin resistance protein VanZ, at 347,988 to 349,214 _RS01560 RS_RS01565: RS_RS01565 - hypothetical protein, at 349,444 to 349,674 _RS01565 RS_RS01570: RS_RS01570 - phospholipase C, phosphocholine-specific, at 349,719 to 351,821 _RS01570 Position (kb) 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 349.152 kb on + strandat 349.228 kb on - strandat 349.337 kb on + strandat 349.338 kb on - strandat 349.338 kb on - strandat 349.416 kb on - strandat 349.662 kb on + strandat 349.662 kb on + strandat 349.663 kb on - strandat 349.663 kb on - strandat 349.663 kb on - strandat 349.833 kb on + strandat 349.908 kb on + strandat 349.908 kb on + strandat 350.161 kb on - strand, within RS_RS01570at 350.190 kb on + strand, within RS_RS01570at 350.226 kb on + strand, within RS_RS01570at 350.227 kb on - strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.268 kb on + strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.269 kb on - strand, within RS_RS01570at 350.341 kb on - strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.397 kb on + strand, within RS_RS01570at 350.398 kb on - strand, within RS_RS01570at 350.458 kb on - strand, within RS_RS01570at 350.470 kb on - strand, within RS_RS01570at 350.490 kb on + strand, within RS_RS01570at 350.503 kb on - strand, within RS_RS01570at 350.577 kb on + strand, within RS_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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349,152 + +0.4
349,228 - +0.8
349,337 + -1.0
349,338 - +0.4
349,338 - +0.1
349,416 - -0.8
349,662 + -0.5
349,662 + -0.6
349,663 - +0.2
349,663 - +1.6
349,663 - +0.1
349,833 + -1.2
349,908 + -0.8
349,908 + -0.0
350,161 - RS_RS01570 0.21 -0.4
350,190 + RS_RS01570 0.22 +0.8
350,226 + RS_RS01570 0.24 -0.4
350,227 - RS_RS01570 0.24 -1.8
350,268 + RS_RS01570 0.26 -2.2
350,268 + RS_RS01570 0.26 +0.8
350,268 + RS_RS01570 0.26 +0.8
350,269 - RS_RS01570 0.26 -0.7
350,269 - RS_RS01570 0.26 -1.6
350,269 - RS_RS01570 0.26 -1.2
350,269 - RS_RS01570 0.26 -1.0
350,269 - RS_RS01570 0.26 -0.7
350,341 - RS_RS01570 0.30 +0.2
350,397 + RS_RS01570 0.32 -0.2
350,397 + RS_RS01570 0.32 -1.1
350,397 + RS_RS01570 0.32 -0.0
350,397 + RS_RS01570 0.32 +0.0
350,398 - RS_RS01570 0.32 -1.6
350,458 - RS_RS01570 0.35 -1.2
350,470 - RS_RS01570 0.36 +2.4
350,490 + RS_RS01570 0.37 +0.8
350,503 - RS_RS01570 0.37 +0.8
350,577 + RS_RS01570 0.41 +1.8

Or see this region's nucleotide sequence