Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23040

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS23035 and RS_RS23040 are separated by 19 nucleotidesRS_RS23040 and RS_RS23045 are separated by 403 nucleotides RS_RS23035: RS_RS23035 - nitrite reductase large subunit, at 1,553,917 to 1,556,469 _RS23035 RS_RS23040: RS_RS23040 - MFS transporter, at 1,556,489 to 1,557,814 _RS23040 RS_RS23045: RS_RS23045 - PAS domain S-box protein, at 1,558,218 to 1,559,762 _RS23045 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1555.596 kb on - strand, within RS_RS23035at 1555.616 kb on + strand, within RS_RS23035at 1555.655 kb on + strand, within RS_RS23035at 1555.655 kb on + strand, within RS_RS23035at 1555.655 kb on + strand, within RS_RS23035at 1555.656 kb on - strand, within RS_RS23035at 1555.656 kb on - strand, within RS_RS23035at 1555.656 kb on - strand, within RS_RS23035at 1555.656 kb on - strand, within RS_RS23035at 1555.656 kb on - strand, within RS_RS23035at 1556.097 kb on - strand, within RS_RS23035at 1556.097 kb on - strand, within RS_RS23035at 1556.351 kb on + strandat 1556.483 kb on + strandat 1556.484 kb on - strandat 1556.490 kb on + strandat 1556.490 kb on + strandat 1556.491 kb on - strandat 1556.526 kb on + strandat 1556.527 kb on - strandat 1556.527 kb on - strandat 1556.748 kb on + strand, within RS_RS23040at 1556.748 kb on + strand, within RS_RS23040at 1556.748 kb on + strand, within RS_RS23040at 1556.748 kb on + strand, within RS_RS23040at 1557.021 kb on + strand, within RS_RS23040at 1557.021 kb on + strand, within RS_RS23040at 1557.022 kb on - strand, within RS_RS23040at 1557.025 kb on - strand, within RS_RS23040at 1557.075 kb on + strand, within RS_RS23040at 1557.075 kb on + strand, within RS_RS23040at 1557.076 kb on - strand, within RS_RS23040at 1557.211 kb on + strand, within RS_RS23040at 1557.211 kb on + strand, within RS_RS23040at 1557.211 kb on + strand, within RS_RS23040at 1557.212 kb on - strand, within RS_RS23040at 1557.212 kb on - strand, within RS_RS23040at 1557.222 kb on + strand, within RS_RS23040at 1557.222 kb on + strand, within RS_RS23040at 1557.223 kb on - strand, within RS_RS23040at 1557.429 kb on + strand, within RS_RS23040at 1557.429 kb on + strand, within RS_RS23040at 1557.430 kb on - strand, within RS_RS23040at 1557.555 kb on + strand, within RS_RS23040at 1557.555 kb on + strand, within RS_RS23040at 1557.555 kb on + strand, within RS_RS23040at 1557.556 kb on - strand, within RS_RS23040at 1557.634 kb on + strand, within RS_RS23040at 1557.635 kb on - strand, within RS_RS23040at 1557.640 kb on + strand, within RS_RS23040at 1557.717 kb on + strandat 1557.717 kb on + strandat 1557.718 kb on - strandat 1557.964 kb on - strandat 1558.095 kb on + strandat 1558.095 kb on + strandat 1558.096 kb on - strandat 1558.096 kb on - strandat 1558.640 kb on + strand, within RS_RS23045at 1558.641 kb on - strand, within RS_RS23045at 1558.641 kb on - strand, within RS_RS23045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
1,555,596 - RS_RS23035 0.66 -1.9
1,555,616 + RS_RS23035 0.67 +2.1
1,555,655 + RS_RS23035 0.68 -0.8
1,555,655 + RS_RS23035 0.68 -0.6
1,555,655 + RS_RS23035 0.68 -0.0
1,555,656 - RS_RS23035 0.68 +0.8
1,555,656 - RS_RS23035 0.68 +0.6
1,555,656 - RS_RS23035 0.68 -1.9
1,555,656 - RS_RS23035 0.68 -0.9
1,555,656 - RS_RS23035 0.68 +0.7
1,556,097 - RS_RS23035 0.85 -0.9
1,556,097 - RS_RS23035 0.85 +0.3
1,556,351 + +0.1
1,556,483 + -0.4
1,556,484 - -1.0
1,556,490 + -0.9
1,556,490 + -0.2
1,556,491 - -1.4
1,556,526 + -0.2
1,556,527 - -1.6
1,556,527 - +1.1
1,556,748 + RS_RS23040 0.20 -2.3
1,556,748 + RS_RS23040 0.20 -0.7
1,556,748 + RS_RS23040 0.20 +0.6
1,556,748 + RS_RS23040 0.20 -0.3
1,557,021 + RS_RS23040 0.40 -0.9
1,557,021 + RS_RS23040 0.40 -0.9
1,557,022 - RS_RS23040 0.40 +0.1
1,557,025 - RS_RS23040 0.40 -0.9
1,557,075 + RS_RS23040 0.44 -0.1
1,557,075 + RS_RS23040 0.44 -0.4
1,557,076 - RS_RS23040 0.44 +0.1
1,557,211 + RS_RS23040 0.54 -0.4
1,557,211 + RS_RS23040 0.54 +1.1
1,557,211 + RS_RS23040 0.54 -0.4
1,557,212 - RS_RS23040 0.55 -0.0
1,557,212 - RS_RS23040 0.55 +0.1
1,557,222 + RS_RS23040 0.55 +0.1
1,557,222 + RS_RS23040 0.55 -1.0
1,557,223 - RS_RS23040 0.55 -0.6
1,557,429 + RS_RS23040 0.71 +0.2
1,557,429 + RS_RS23040 0.71 -0.2
1,557,430 - RS_RS23040 0.71 -2.5
1,557,555 + RS_RS23040 0.80 -1.9
1,557,555 + RS_RS23040 0.80 -0.3
1,557,555 + RS_RS23040 0.80 -1.8
1,557,556 - RS_RS23040 0.80 +0.0
1,557,634 + RS_RS23040 0.86 -0.7
1,557,635 - RS_RS23040 0.86 +2.1
1,557,640 + RS_RS23040 0.87 -0.3
1,557,717 + -0.4
1,557,717 + +3.3
1,557,718 - -0.1
1,557,964 - -1.0
1,558,095 + -0.5
1,558,095 + -0.9
1,558,096 - +0.6
1,558,096 - -0.0
1,558,640 + RS_RS23045 0.27 +0.1
1,558,641 - RS_RS23045 0.27 +2.1
1,558,641 - RS_RS23045 0.27 -0.4

Or see this region's nucleotide sequence