Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20575

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20570 and RS_RS20575 are separated by 31 nucleotidesRS_RS20575 and RS_RS20580 are separated by 115 nucleotides RS_RS20570: RS_RS20570 - porin, at 906,856 to 908,229 _RS20570 RS_RS20575: RS_RS20575 - FMN-binding protein, at 908,261 to 908,821 _RS20575 RS_RS20580: RS_RS20580 - hypothetical protein, at 908,937 to 909,416 _RS20580 Position (kb) 908 909Strain fitness (log2 ratio) -2 -1 0 1 2 3at 907.342 kb on + strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.343 kb on - strand, within RS_RS20570at 907.439 kb on - strand, within RS_RS20570at 907.439 kb on - strand, within RS_RS20570at 907.439 kb on - strand, within RS_RS20570at 907.439 kb on - strand, within RS_RS20570at 907.441 kb on + strand, within RS_RS20570at 907.441 kb on + strand, within RS_RS20570at 907.514 kb on - strand, within RS_RS20570at 907.702 kb on + strand, within RS_RS20570at 907.702 kb on + strand, within RS_RS20570at 907.703 kb on - strand, within RS_RS20570at 907.717 kb on + strand, within RS_RS20570at 907.717 kb on + strand, within RS_RS20570at 907.718 kb on - strand, within RS_RS20570at 907.718 kb on - strand, within RS_RS20570at 907.718 kb on - strand, within RS_RS20570at 907.867 kb on + strand, within RS_RS20570at 907.867 kb on + strand, within RS_RS20570at 907.867 kb on + strand, within RS_RS20570at 907.867 kb on + strand, within RS_RS20570at 907.868 kb on - strand, within RS_RS20570at 907.868 kb on - strand, within RS_RS20570at 907.873 kb on + strand, within RS_RS20570at 907.873 kb on + strand, within RS_RS20570at 907.874 kb on - strand, within RS_RS20570at 907.874 kb on - strand, within RS_RS20570at 907.874 kb on - strand, within RS_RS20570at 907.891 kb on - strand, within RS_RS20570at 907.891 kb on - strand, within RS_RS20570at 907.948 kb on + strand, within RS_RS20570at 907.972 kb on + strand, within RS_RS20570at 908.020 kb on + strand, within RS_RS20570at 908.029 kb on + strand, within RS_RS20570at 908.029 kb on + strand, within RS_RS20570at 908.030 kb on - strand, within RS_RS20570at 908.131 kb on + strandat 908.132 kb on - strandat 908.165 kb on - strandat 908.228 kb on - strandat 908.339 kb on + strand, within RS_RS20575at 908.351 kb on + strand, within RS_RS20575at 908.351 kb on + strand, within RS_RS20575at 908.351 kb on + strand, within RS_RS20575at 908.352 kb on - strand, within RS_RS20575at 908.352 kb on - strand, within RS_RS20575at 908.528 kb on + strand, within RS_RS20575at 908.528 kb on + strand, within RS_RS20575at 908.528 kb on + strand, within RS_RS20575at 908.529 kb on - strand, within RS_RS20575at 908.573 kb on + strand, within RS_RS20575at 908.574 kb on - strand, within RS_RS20575at 908.574 kb on - strand, within RS_RS20575at 908.574 kb on - strand, within RS_RS20575at 908.574 kb on - strand, within RS_RS20575at 908.645 kb on + strand, within RS_RS20575at 908.645 kb on + strand, within RS_RS20575at 908.645 kb on + strand, within RS_RS20575at 908.646 kb on - strand, within RS_RS20575at 908.893 kb on + strandat 908.893 kb on + strandat 908.893 kb on + strandat 908.893 kb on + strandat 908.893 kb on + strandat 908.893 kb on + strandat 908.894 kb on - strandat 908.894 kb on - strandat 908.894 kb on - strandat 908.894 kb on - strandat 909.015 kb on + strand, within RS_RS20580at 909.015 kb on + strand, within RS_RS20580at 909.015 kb on + strand, within RS_RS20580at 909.015 kb on + strand, within RS_RS20580at 909.016 kb on - strand, within RS_RS20580at 909.016 kb on - strand, within RS_RS20580at 909.154 kb on - strand, within RS_RS20580at 909.182 kb on + strand, within RS_RS20580at 909.183 kb on - strand, within RS_RS20580at 909.268 kb on - strand, within RS_RS20580at 909.276 kb on + strand, within RS_RS20580at 909.277 kb on - strand, within RS_RS20580at 909.279 kb on + strand, within RS_RS20580at 909.279 kb on + strand, within RS_RS20580at 909.279 kb on + strand, within RS_RS20580at 909.280 kb on - strand, within RS_RS20580at 909.462 kb on + strandat 909.463 kb on - strandat 909.530 kb on + strandat 909.530 kb on + strandat 909.531 kb on - strandat 909.750 kb on + strandat 909.750 kb on + strandat 909.796 kb on + strandat 909.796 kb on + strandat 909.796 kb on + strandat 909.797 kb on - strandat 909.797 kb on - strandat 909.797 kb on - strandat 909.811 kb on + strandat 909.811 kb on + strandat 909.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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907,342 + RS_RS20570 0.35 -0.3
907,343 - RS_RS20570 0.35 -0.1
907,343 - RS_RS20570 0.35 +0.3
907,343 - RS_RS20570 0.35 -0.6
907,343 - RS_RS20570 0.35 +2.0
907,343 - RS_RS20570 0.35 -1.3
907,343 - RS_RS20570 0.35 -0.4
907,439 - RS_RS20570 0.42 -0.3
907,439 - RS_RS20570 0.42 -2.0
907,439 - RS_RS20570 0.42 -2.1
907,439 - RS_RS20570 0.42 -0.2
907,441 + RS_RS20570 0.43 -0.5
907,441 + RS_RS20570 0.43 +2.0
907,514 - RS_RS20570 0.48 -0.4
907,702 + RS_RS20570 0.62 +0.4
907,702 + RS_RS20570 0.62 -1.3
907,703 - RS_RS20570 0.62 -0.8
907,717 + RS_RS20570 0.63 +0.5
907,717 + RS_RS20570 0.63 +2.0
907,718 - RS_RS20570 0.63 +0.0
907,718 - RS_RS20570 0.63 +1.0
907,718 - RS_RS20570 0.63 +0.1
907,867 + RS_RS20570 0.74 -0.5
907,867 + RS_RS20570 0.74 -0.8
907,867 + RS_RS20570 0.74 -2.1
907,867 + RS_RS20570 0.74 -0.7
907,868 - RS_RS20570 0.74 +0.5
907,868 - RS_RS20570 0.74 -1.5
907,873 + RS_RS20570 0.74 -0.8
907,873 + RS_RS20570 0.74 -0.5
907,874 - RS_RS20570 0.74 -0.3
907,874 - RS_RS20570 0.74 +0.5
907,874 - RS_RS20570 0.74 -0.7
907,891 - RS_RS20570 0.75 -1.9
907,891 - RS_RS20570 0.75 -0.3
907,948 + RS_RS20570 0.79 -0.5
907,972 + RS_RS20570 0.81 +0.0
908,020 + RS_RS20570 0.85 -1.0
908,029 + RS_RS20570 0.85 -1.1
908,029 + RS_RS20570 0.85 -1.4
908,030 - RS_RS20570 0.85 -0.6
908,131 + -2.0
908,132 - +0.7
908,165 - -0.3
908,228 - -1.6
908,339 + RS_RS20575 0.14 -0.3
908,351 + RS_RS20575 0.16 +0.0
908,351 + RS_RS20575 0.16 -0.3
908,351 + RS_RS20575 0.16 -1.0
908,352 - RS_RS20575 0.16 -1.1
908,352 - RS_RS20575 0.16 +0.3
908,528 + RS_RS20575 0.48 -1.0
908,528 + RS_RS20575 0.48 +1.0
908,528 + RS_RS20575 0.48 +0.2
908,529 - RS_RS20575 0.48 -1.9
908,573 + RS_RS20575 0.56 -0.5
908,574 - RS_RS20575 0.56 +0.5
908,574 - RS_RS20575 0.56 -0.5
908,574 - RS_RS20575 0.56 +3.6
908,574 - RS_RS20575 0.56 +1.5
908,645 + RS_RS20575 0.68 +2.0
908,645 + RS_RS20575 0.68 -2.1
908,645 + RS_RS20575 0.68 -0.5
908,646 - RS_RS20575 0.69 +1.0
908,893 + -1.6
908,893 + +0.3
908,893 + -0.5
908,893 + -0.3
908,893 + -1.2
908,893 + +0.4
908,894 - +0.3
908,894 - -1.7
908,894 - +1.4
908,894 - +0.0
909,015 + RS_RS20580 0.16 +1.1
909,015 + RS_RS20580 0.16 -0.9
909,015 + RS_RS20580 0.16 +0.2
909,015 + RS_RS20580 0.16 -0.1
909,016 - RS_RS20580 0.16 -0.3
909,016 - RS_RS20580 0.16 -0.2
909,154 - RS_RS20580 0.45 +0.0
909,182 + RS_RS20580 0.51 +0.4
909,183 - RS_RS20580 0.51 +0.6
909,268 - RS_RS20580 0.69 -0.6
909,276 + RS_RS20580 0.71 +0.4
909,277 - RS_RS20580 0.71 -1.3
909,279 + RS_RS20580 0.71 +0.0
909,279 + RS_RS20580 0.71 +0.4
909,279 + RS_RS20580 0.71 +0.3
909,280 - RS_RS20580 0.71 +0.0
909,462 + -0.6
909,463 - -0.7
909,530 + -0.7
909,530 + +1.0
909,531 - -0.1
909,750 + -1.3
909,750 + +1.0
909,796 + +0.4
909,796 + +0.1
909,796 + -0.3
909,797 - -0.1
909,797 - +0.4
909,797 - +0.0
909,811 + -1.1
909,811 + +1.0
909,812 - +0.4

Or see this region's nucleotide sequence