Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17915

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17910 and RS_RS17915 are separated by 386 nucleotidesRS_RS17915 and RS_RS17920 are separated by 145 nucleotidesRS_RS17920 and RS_RS17925 overlap by 22 nucleotides RS_RS17910: RS_RS17910 - PhoPQ-regulated protein, at 186,699 to 188,165 _RS17910 RS_RS17915: RS_RS17915 - drug:proton antiporter, at 188,552 to 189,862 _RS17915 RS_RS17920: RS_RS17920 - 4'-phosphopantetheinyl transferase, at 190,008 to 190,760 _RS17920 RS_RS17925: RS_RS17925 - MATE family efflux transporter, at 190,739 to 192,187 _RS17925 Position (kb) 188 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.552 kb on + strand, within RS_RS17910at 187.552 kb on + strand, within RS_RS17910at 187.553 kb on - strand, within RS_RS17910at 187.553 kb on - strand, within RS_RS17910at 187.715 kb on - strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.900 kb on + strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.901 kb on - strand, within RS_RS17910at 187.975 kb on + strand, within RS_RS17910at 187.975 kb on + strand, within RS_RS17910at 187.975 kb on + strand, within RS_RS17910at 187.976 kb on - strand, within RS_RS17910at 187.976 kb on - strand, within RS_RS17910at 187.976 kb on - strand, within RS_RS17910at 187.976 kb on - strand, within RS_RS17910at 188.023 kb on + strandat 188.023 kb on + strandat 188.024 kb on - strandat 188.113 kb on + strandat 188.363 kb on + strandat 188.363 kb on + strandat 188.801 kb on + strand, within RS_RS17915at 188.901 kb on + strand, within RS_RS17915at 188.901 kb on + strand, within RS_RS17915at 188.901 kb on + strand, within RS_RS17915at 188.902 kb on - strand, within RS_RS17915at 188.902 kb on - strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.005 kb on + strand, within RS_RS17915at 189.006 kb on - strand, within RS_RS17915at 189.006 kb on - strand, within RS_RS17915at 189.012 kb on - strand, within RS_RS17915at 189.012 kb on - strand, within RS_RS17915at 189.012 kb on - strand, within RS_RS17915at 189.036 kb on - strand, within RS_RS17915at 189.038 kb on + strand, within RS_RS17915at 189.038 kb on + strand, within RS_RS17915at 189.038 kb on + strand, within RS_RS17915at 189.039 kb on - strand, within RS_RS17915at 189.200 kb on + strand, within RS_RS17915at 189.201 kb on - strand, within RS_RS17915at 189.210 kb on - strand, within RS_RS17915at 189.210 kb on - strand, within RS_RS17915at 189.212 kb on + strand, within RS_RS17915at 189.213 kb on - strand, within RS_RS17915at 189.254 kb on + strand, within RS_RS17915at 189.254 kb on + strand, within RS_RS17915at 189.788 kb on + strandat 189.788 kb on + strandat 189.789 kb on - strandat 189.789 kb on - strandat 189.789 kb on - strandat 189.794 kb on + strandat 189.794 kb on + strandat 189.795 kb on - strandat 189.795 kb on - strandat 189.795 kb on - strandat 189.795 kb on - strandat 189.795 kb on - strandat 189.861 kb on + strandat 190.042 kb on - strandat 190.042 kb on - strandat 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.134 kb on + strand, within RS_RS17920at 190.135 kb on - strand, within RS_RS17920at 190.135 kb on - strand, within RS_RS17920at 190.149 kb on + strand, within RS_RS17920at 190.479 kb on + strand, within RS_RS17920at 190.480 kb on - strand, within RS_RS17920at 190.480 kb on - strand, within RS_RS17920at 190.633 kb on - strand, within RS_RS17920at 190.648 kb on - strand, within RS_RS17920at 190.648 kb on - strand, within RS_RS17920at 190.648 kb on - strand, within RS_RS17920at 190.648 kb on - strand, within RS_RS17920at 190.846 kb on - strandat 190.846 kb on - strandat 190.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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187,552 + RS_RS17910 0.58 +1.4
187,552 + RS_RS17910 0.58 +0.8
187,553 - RS_RS17910 0.58 -0.4
187,553 - RS_RS17910 0.58 -1.2
187,715 - RS_RS17910 0.69 -0.1
187,900 + RS_RS17910 0.82 -1.0
187,900 + RS_RS17910 0.82 +0.1
187,900 + RS_RS17910 0.82 +2.4
187,900 + RS_RS17910 0.82 +1.4
187,900 + RS_RS17910 0.82 -0.8
187,900 + RS_RS17910 0.82 +0.1
187,901 - RS_RS17910 0.82 -1.1
187,901 - RS_RS17910 0.82 -0.3
187,901 - RS_RS17910 0.82 +1.6
187,901 - RS_RS17910 0.82 +0.4
187,901 - RS_RS17910 0.82 +0.8
187,901 - RS_RS17910 0.82 -0.9
187,901 - RS_RS17910 0.82 -0.4
187,901 - RS_RS17910 0.82 +0.4
187,975 + RS_RS17910 0.87 +1.4
187,975 + RS_RS17910 0.87 -1.2
187,975 + RS_RS17910 0.87 +0.4
187,976 - RS_RS17910 0.87 +0.8
187,976 - RS_RS17910 0.87 +0.1
187,976 - RS_RS17910 0.87 -0.5
187,976 - RS_RS17910 0.87 -1.5
188,023 + +2.4
188,023 + +0.1
188,024 - +0.8
188,113 + -0.2
188,363 + -0.7
188,363 + -2.0
188,801 + RS_RS17915 0.19 +0.8
188,901 + RS_RS17915 0.27 -0.2
188,901 + RS_RS17915 0.27 -0.6
188,901 + RS_RS17915 0.27 -0.0
188,902 - RS_RS17915 0.27 +1.4
188,902 - RS_RS17915 0.27 +1.4
189,005 + RS_RS17915 0.35 +0.3
189,005 + RS_RS17915 0.35 -0.1
189,005 + RS_RS17915 0.35 -0.6
189,005 + RS_RS17915 0.35 -0.1
189,005 + RS_RS17915 0.35 -1.4
189,005 + RS_RS17915 0.35 -1.9
189,005 + RS_RS17915 0.35 +0.1
189,005 + RS_RS17915 0.35 +0.1
189,006 - RS_RS17915 0.35 +0.4
189,006 - RS_RS17915 0.35 +0.3
189,012 - RS_RS17915 0.35 -1.0
189,012 - RS_RS17915 0.35 -0.2
189,012 - RS_RS17915 0.35 +0.1
189,036 - RS_RS17915 0.37 -0.2
189,038 + RS_RS17915 0.37 +0.1
189,038 + RS_RS17915 0.37 -1.8
189,038 + RS_RS17915 0.37 -0.3
189,039 - RS_RS17915 0.37 +0.6
189,200 + RS_RS17915 0.49 -0.4
189,201 - RS_RS17915 0.50 -3.2
189,210 - RS_RS17915 0.50 +2.4
189,210 - RS_RS17915 0.50 -0.6
189,212 + RS_RS17915 0.50 +2.4
189,213 - RS_RS17915 0.50 -1.2
189,254 + RS_RS17915 0.54 +1.4
189,254 + RS_RS17915 0.54 -0.2
189,788 + -0.9
189,788 + +0.3
189,789 - +0.3
189,789 - -0.5
189,789 - -0.4
189,794 + +0.7
189,794 + +0.1
189,795 - +0.4
189,795 - +2.4
189,795 - -0.2
189,795 - -0.7
189,795 - +0.3
189,861 + +0.3
190,042 - +1.4
190,042 - -0.0
190,134 + RS_RS17920 0.17 -0.5
190,134 + RS_RS17920 0.17 -1.2
190,134 + RS_RS17920 0.17 +2.1
190,134 + RS_RS17920 0.17 -0.4
190,134 + RS_RS17920 0.17 -1.3
190,134 + RS_RS17920 0.17 +0.4
190,134 + RS_RS17920 0.17 +1.4
190,135 - RS_RS17920 0.17 -0.8
190,135 - RS_RS17920 0.17 -0.2
190,149 + RS_RS17920 0.19 +1.1
190,479 + RS_RS17920 0.63 +2.4
190,480 - RS_RS17920 0.63 +2.4
190,480 - RS_RS17920 0.63 +0.1
190,633 - RS_RS17920 0.83 -1.5
190,648 - RS_RS17920 0.85 +0.2
190,648 - RS_RS17920 0.85 -0.6
190,648 - RS_RS17920 0.85 -0.4
190,648 - RS_RS17920 0.85 +1.0
190,846 - -0.6
190,846 - +0.7
190,846 - -0.2

Or see this region's nucleotide sequence