Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13840

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13830 and RS_RS13835 are separated by 87 nucleotidesRS_RS13835 and RS_RS13840 overlap by 4 nucleotidesRS_RS13840 and RS_RS13845 are separated by 467 nucleotides RS_RS13830: RS_RS13830 - DUF937 domain-containing protein, at 2,975,526 to 2,976,089 _RS13830 RS_RS13835: RS_RS13835 - hypothetical protein, at 2,976,177 to 2,976,773 _RS13835 RS_RS13840: RS_RS13840 - ribonuclease N1, at 2,976,770 to 2,977,201 _RS13840 RS_RS13845: RS_RS13845 - NADP-dependent malic enzyme, at 2,977,669 to 2,980,014 _RS13845 Position (kb) 2976 2977 2978Strain fitness (log2 ratio) -2 -1 0 1 2at 2975.801 kb on + strand, within RS_RS13830at 2976.817 kb on - strand, within RS_RS13840at 2976.901 kb on - strand, within RS_RS13840at 2976.913 kb on - strand, within RS_RS13840at 2976.946 kb on - strand, within RS_RS13840at 2977.163 kb on + strandat 2977.435 kb on - strandat 2977.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,975,801 + RS_RS13830 0.49 -2.0
2,976,817 - RS_RS13840 0.11 +0.3
2,976,901 - RS_RS13840 0.30 +0.7
2,976,913 - RS_RS13840 0.33 +0.8
2,976,946 - RS_RS13840 0.41 +0.1
2,977,163 + +2.4
2,977,435 - +0.1
2,977,833 - +0.0

Or see this region's nucleotide sequence