Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS13815 and RS_RS13820 are separated by 74 nucleotides RS_RS13820 and RS_RS13825 are separated by 20 nucleotides RS_RS13825 and RS_RS13830 are separated by 58 nucleotides RS_RS13830 and RS_RS13835 are separated by 87 nucleotides
RS_RS13815: RS_RS13815 - transcriptional regulator GcvA, at 2,973,271 to 2,974,197
_RS13815
RS_RS13820: RS_RS13820 - VOC family protein, at 2,974,272 to 2,974,697
_RS13820
RS_RS13825: RS_RS13825 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 2,974,718 to 2,975,467
_RS13825
RS_RS13830: RS_RS13830 - DUF937 domain-containing protein, at 2,975,526 to 2,976,089
_RS13830
RS_RS13835: RS_RS13835 - hypothetical protein, at 2,976,177 to 2,976,773
_RS13835
Position (kb)
2974
2975
2976 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2974.067 kb on - strand, within RS_RS13815 at 2974.069 kb on + strand, within RS_RS13815 at 2974.069 kb on + strand, within RS_RS13815 at 2974.235 kb on - strand at 2974.354 kb on - strand, within RS_RS13820 at 2974.428 kb on + strand, within RS_RS13820 at 2974.428 kb on + strand, within RS_RS13820 at 2974.429 kb on - strand, within RS_RS13820 at 2974.429 kb on - strand, within RS_RS13820 at 2974.534 kb on - strand, within RS_RS13820 at 2974.654 kb on - strand, within RS_RS13820 at 2974.798 kb on + strand, within RS_RS13825 at 2975.373 kb on - strand, within RS_RS13825 at 2975.801 kb on + strand, within RS_RS13830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,974,067 - RS_RS13815 0.86 -3.3 2,974,069 + RS_RS13815 0.86 -0.8 2,974,069 + RS_RS13815 0.86 -0.9 2,974,235 - -0.5 2,974,354 - RS_RS13820 0.19 -0.3 2,974,428 + RS_RS13820 0.37 -0.5 2,974,428 + RS_RS13820 0.37 -0.9 2,974,429 - RS_RS13820 0.37 +0.8 2,974,429 - RS_RS13820 0.37 +0.0 2,974,534 - RS_RS13820 0.62 -0.3 2,974,654 - RS_RS13820 0.90 -0.7 2,974,798 + RS_RS13825 0.11 +0.8 2,975,373 - RS_RS13825 0.87 +0.3 2,975,801 + RS_RS13830 0.49 -2.0
Or see this region's nucleotide sequence