Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10415

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10410 and RS_RS10415 are separated by 55 nucleotidesRS_RS10415 and RS_RS10420 overlap by 1 nucleotides RS_RS10410: RS_RS10410 - ketol-acid reductoisomerase, at 2,248,264 to 2,249,280 _RS10410 RS_RS10415: RS_RS10415 - acetolactate synthase small subunit, at 2,249,336 to 2,249,827 _RS10415 RS_RS10420: RS_RS10420 - acetolactate synthase 3 large subunit, at 2,249,827 to 2,251,584 _RS10420 Position (kb) 2249 2250Strain fitness (log2 ratio) -2 -1 0 1 2at 2249.303 kb on - strandat 2249.303 kb on - strandat 2249.303 kb on - strandat 2249.470 kb on - strand, within RS_RS10415

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,249,303 - -1.2
2,249,303 - -2.6
2,249,303 - +0.5
2,249,470 - RS_RS10415 0.27 +2.1

Or see this region's nucleotide sequence