Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07890

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07885 and RS_RS07890 are separated by 64 nucleotidesRS_RS07890 and RS_RS07895 are separated by 206 nucleotides RS_RS07885: RS_RS07885 - chorismate synthase, at 1,681,674 to 1,682,774 _RS07885 RS_RS07890: RS_RS07890 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 1,682,839 to 1,684,527 _RS07890 RS_RS07895: RS_RS07895 - NAD(P)-dependent oxidoreductase, at 1,684,734 to 1,685,519 _RS07895 Position (kb) 1682 1683 1684 1685Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1682.004 kb on + strand, within RS_RS07885at 1682.840 kb on + strandat 1682.840 kb on + strandat 1682.840 kb on + strandat 1682.840 kb on + strandat 1682.840 kb on + strandat 1682.841 kb on - strandat 1682.841 kb on - strandat 1684.545 kb on - strandat 1684.566 kb on - strandat 1684.710 kb on + strandat 1684.711 kb on - strandat 1685.238 kb on + strand, within RS_RS07895at 1685.238 kb on + strand, within RS_RS07895at 1685.239 kb on - strand, within RS_RS07895

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,682,004 + RS_RS07885 0.30 -4.6
1,682,840 + +1.9
1,682,840 + -1.4
1,682,840 + -0.1
1,682,840 + -0.4
1,682,840 + -0.0
1,682,841 - -1.5
1,682,841 - -1.4
1,684,545 - -0.2
1,684,566 - +0.7
1,684,710 + +0.7
1,684,711 - +0.3
1,685,238 + RS_RS07895 0.64 -0.1
1,685,238 + RS_RS07895 0.64 +0.9
1,685,239 - RS_RS07895 0.64 +0.3

Or see this region's nucleotide sequence