Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22365

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS22360 and RS_RS22365 are separated by 18 nucleotidesRS_RS22365 and RS_RS22375 overlap by 8 nucleotidesRS_RS22375 and RS_RS22380 are separated by 51 nucleotides RS_RS22360: RS_RS22360 - pilus assembly protein, at 1,377,813 to 1,379,132 _RS22360 RS_RS22365: RS_RS22365 - membrane protein, at 1,379,151 to 1,380,515 _RS22365 RS_RS22375: RS_RS22375 - Flp pilus assembly protein CpaB, at 1,380,508 to 1,381,448 _RS22375 RS_RS22380: RS_RS22380 - pilus assembly protein, at 1,381,500 to 1,381,991 _RS22380 Position (kb) 1379 1380 1381Strain fitness (log2 ratio) -2 -1 0 1 2at 1378.529 kb on - strand, within RS_RS22360at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.347 kb on + strand, within RS_RS22365at 1379.348 kb on - strand, within RS_RS22365at 1379.348 kb on - strand, within RS_RS22365at 1379.641 kb on + strand, within RS_RS22365at 1379.641 kb on + strand, within RS_RS22365at 1379.887 kb on + strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1379.888 kb on - strand, within RS_RS22365at 1380.115 kb on + strand, within RS_RS22365at 1380.115 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.207 kb on + strand, within RS_RS22365at 1380.208 kb on - strand, within RS_RS22365at 1380.208 kb on - strand, within RS_RS22365at 1380.208 kb on - strand, within RS_RS22365at 1380.208 kb on - strand, within RS_RS22365at 1380.208 kb on - strand, within RS_RS22365at 1380.214 kb on + strand, within RS_RS22365at 1380.214 kb on + strand, within RS_RS22365at 1380.214 kb on + strand, within RS_RS22365at 1381.020 kb on + strand, within RS_RS22375at 1381.020 kb on + strand, within RS_RS22375at 1381.020 kb on + strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.021 kb on - strand, within RS_RS22375at 1381.030 kb on + strand, within RS_RS22375at 1381.030 kb on + strand, within RS_RS22375at 1381.031 kb on - strand, within RS_RS22375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
1,378,529 - RS_RS22360 0.54 -0.4
1,379,347 + RS_RS22365 0.14 +0.6
1,379,347 + RS_RS22365 0.14 +0.0
1,379,347 + RS_RS22365 0.14 -0.1
1,379,347 + RS_RS22365 0.14 +0.3
1,379,348 - RS_RS22365 0.14 -1.5
1,379,348 - RS_RS22365 0.14 +0.2
1,379,641 + RS_RS22365 0.36 -1.6
1,379,641 + RS_RS22365 0.36 +0.3
1,379,887 + RS_RS22365 0.54 +0.6
1,379,888 - RS_RS22365 0.54 -1.2
1,379,888 - RS_RS22365 0.54 +1.2
1,379,888 - RS_RS22365 0.54 -1.0
1,379,888 - RS_RS22365 0.54 -0.2
1,380,115 + RS_RS22365 0.71 -0.4
1,380,115 + RS_RS22365 0.71 +0.3
1,380,207 + RS_RS22365 0.77 -0.3
1,380,207 + RS_RS22365 0.77 +0.7
1,380,207 + RS_RS22365 0.77 +0.2
1,380,207 + RS_RS22365 0.77 -0.5
1,380,207 + RS_RS22365 0.77 -1.3
1,380,207 + RS_RS22365 0.77 -0.5
1,380,207 + RS_RS22365 0.77 -1.5
1,380,208 - RS_RS22365 0.77 -0.8
1,380,208 - RS_RS22365 0.77 +0.2
1,380,208 - RS_RS22365 0.77 -0.5
1,380,208 - RS_RS22365 0.77 +1.9
1,380,208 - RS_RS22365 0.77 +2.2
1,380,214 + RS_RS22365 0.78 -1.0
1,380,214 + RS_RS22365 0.78 -0.0
1,380,214 + RS_RS22365 0.78 -0.2
1,381,020 + RS_RS22375 0.54 -1.3
1,381,020 + RS_RS22375 0.54 -0.7
1,381,020 + RS_RS22375 0.54 -0.2
1,381,021 - RS_RS22375 0.55 +2.5
1,381,021 - RS_RS22375 0.55 -0.2
1,381,021 - RS_RS22375 0.55 +1.2
1,381,021 - RS_RS22375 0.55 -0.2
1,381,021 - RS_RS22375 0.55 +0.8
1,381,021 - RS_RS22375 0.55 -0.8
1,381,030 + RS_RS22375 0.55 -2.6
1,381,030 + RS_RS22375 0.55 -0.8
1,381,031 - RS_RS22375 0.56 -0.7

Or see this region's nucleotide sequence