Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18140

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18135 and RS_RS18140 are separated by 119 nucleotidesRS_RS18140 and RS_RS18145 are separated by 76 nucleotidesRS_RS18145 and RS_RS18150 overlap by 4 nucleotides RS_RS18135: RS_RS18135 - hypothetical protein, at 253,487 to 254,530 _RS18135 RS_RS18140: RS_RS18140 - IS5/IS1182 family transposase, at 254,650 to 255,636 _RS18140 RS_RS18145: RS_RS18145 - hypothetical protein, at 255,713 to 256,201 _RS18145 RS_RS18150: RS_RS18150 - hypothetical protein, at 256,198 to 257,904 _RS18150 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 254.070 kb on + strand, within RS_RS18135at 254.127 kb on + strand, within RS_RS18135at 254.201 kb on + strand, within RS_RS18135at 254.202 kb on - strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.239 kb on + strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.240 kb on - strand, within RS_RS18135at 254.392 kb on + strand, within RS_RS18135at 254.497 kb on + strandat 254.498 kb on - strandat 254.499 kb on + strandat 254.499 kb on + strandat 254.499 kb on + strandat 254.499 kb on + strandat 254.500 kb on - strandat 254.500 kb on - strandat 255.709 kb on + strandat 255.733 kb on + strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.734 kb on - strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.735 kb on + strandat 255.736 kb on - strandat 255.751 kb on - strandat 255.801 kb on - strand, within RS_RS18145at 255.801 kb on - strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.823 kb on + strand, within RS_RS18145at 255.825 kb on + strand, within RS_RS18145at 255.855 kb on + strand, within RS_RS18145at 255.856 kb on - strand, within RS_RS18145at 255.897 kb on + strand, within RS_RS18145at 255.898 kb on - strand, within RS_RS18145at 255.953 kb on + strand, within RS_RS18145at 256.066 kb on + strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.067 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.079 kb on - strand, within RS_RS18145at 256.109 kb on + strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.110 kb on - strand, within RS_RS18145at 256.117 kb on - strand, within RS_RS18145at 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.234 kb on + strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.235 kb on - strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.244 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.277 kb on + strandat 256.355 kb on + strandat 256.556 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.565 kb on + strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.566 kb on - strand, within RS_RS18150at 256.580 kb on + strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150at 256.581 kb on - strand, within RS_RS18150

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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254,070 + RS_RS18135 0.56 -0.2
254,127 + RS_RS18135 0.61 +2.4
254,201 + RS_RS18135 0.68 +2.4
254,202 - RS_RS18135 0.68 -0.4
254,239 + RS_RS18135 0.72 +0.4
254,239 + RS_RS18135 0.72 +0.4
254,239 + RS_RS18135 0.72 +0.6
254,239 + RS_RS18135 0.72 -0.2
254,239 + RS_RS18135 0.72 -0.4
254,239 + RS_RS18135 0.72 +0.3
254,239 + RS_RS18135 0.72 -0.2
254,239 + RS_RS18135 0.72 +0.8
254,240 - RS_RS18135 0.72 +1.9
254,240 - RS_RS18135 0.72 -0.2
254,240 - RS_RS18135 0.72 +0.0
254,240 - RS_RS18135 0.72 +2.4
254,240 - RS_RS18135 0.72 -0.2
254,240 - RS_RS18135 0.72 -1.1
254,240 - RS_RS18135 0.72 +0.0
254,240 - RS_RS18135 0.72 +2.4
254,240 - RS_RS18135 0.72 -1.0
254,392 + RS_RS18135 0.87 -1.5
254,497 + -1.4
254,498 - -1.0
254,499 + +0.4
254,499 + -0.9
254,499 + -0.2
254,499 + -0.8
254,500 - +0.2
254,500 - +0.3
255,709 + -0.4
255,733 + +1.6
255,734 - +6.4
255,734 - +0.0
255,734 - +1.4
255,735 + +0.4
255,735 + +0.0
255,735 + +0.8
255,736 - +0.5
255,751 - +1.8
255,801 - RS_RS18145 0.18 -0.8
255,801 - RS_RS18145 0.18 -0.6
255,823 + RS_RS18145 0.22 +1.4
255,823 + RS_RS18145 0.22 +0.0
255,825 + RS_RS18145 0.23 +1.4
255,855 + RS_RS18145 0.29 +2.4
255,856 - RS_RS18145 0.29 -0.6
255,897 + RS_RS18145 0.38 -0.4
255,898 - RS_RS18145 0.38 +1.4
255,953 + RS_RS18145 0.49 +0.1
256,066 + RS_RS18145 0.72 -0.5
256,067 - RS_RS18145 0.72 -0.5
256,067 - RS_RS18145 0.72 -1.0
256,079 - RS_RS18145 0.75 -1.1
256,079 - RS_RS18145 0.75 -2.3
256,109 + RS_RS18145 0.81 -0.2
256,110 - RS_RS18145 0.81 +0.1
256,110 - RS_RS18145 0.81 +2.4
256,110 - RS_RS18145 0.81 +0.3
256,117 - RS_RS18145 0.83 -0.3
256,234 + +2.4
256,234 + +0.4
256,234 + +0.2
256,234 + +0.1
256,234 + +0.4
256,235 - +0.1
256,235 - +0.1
256,235 - +0.3
256,235 - -1.0
256,244 + -0.3
256,244 + +0.2
256,244 + +1.2
256,277 + -1.0
256,277 + +0.5
256,277 + -0.6
256,355 + -1.0
256,556 + RS_RS18150 0.21 +1.4
256,565 + RS_RS18150 0.21 -0.5
256,565 + RS_RS18150 0.21 -0.9
256,565 + RS_RS18150 0.21 +1.4
256,566 - RS_RS18150 0.22 +0.2
256,566 - RS_RS18150 0.22 +0.0
256,580 + RS_RS18150 0.22 +1.4
256,581 - RS_RS18150 0.22 +0.8
256,581 - RS_RS18150 0.22 -0.8
256,581 - RS_RS18150 0.22 -1.1

Or see this region's nucleotide sequence