Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18105

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18100 and RS_RS18105 are separated by 197 nucleotidesRS_RS18105 and RS_RS18110 are separated by 23 nucleotides RS_RS18100: RS_RS18100 - disulfide bond formation protein B, at 243,589 to 244,143 _RS18100 RS_RS18105: RS_RS18105 - aspartate aminotransferase family protein, at 244,341 to 246,851 _RS18105 RS_RS18110: RS_RS18110 - decarboxylase, at 246,875 to 249,301 _RS18110 Position (kb) 244 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 243.483 kb on + strandat 243.483 kb on + strandat 243.535 kb on - strandat 243.535 kb on - strandat 243.544 kb on + strandat 243.570 kb on + strandat 243.655 kb on + strand, within RS_RS18100at 243.655 kb on + strand, within RS_RS18100at 243.655 kb on + strand, within RS_RS18100at 243.656 kb on - strand, within RS_RS18100at 243.785 kb on - strand, within RS_RS18100at 243.849 kb on + strand, within RS_RS18100at 243.849 kb on + strand, within RS_RS18100at 243.850 kb on - strand, within RS_RS18100at 243.850 kb on - strand, within RS_RS18100at 243.871 kb on + strand, within RS_RS18100at 243.871 kb on + strand, within RS_RS18100at 243.872 kb on - strand, within RS_RS18100at 243.901 kb on + strand, within RS_RS18100at 243.901 kb on + strand, within RS_RS18100at 243.901 kb on + strand, within RS_RS18100at 243.901 kb on + strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.902 kb on - strand, within RS_RS18100at 243.903 kb on + strand, within RS_RS18100at 243.903 kb on + strand, within RS_RS18100at 244.123 kb on + strandat 244.123 kb on + strandat 244.124 kb on - strandat 244.598 kb on - strand, within RS_RS18105at 244.666 kb on + strand, within RS_RS18105at 244.666 kb on + strand, within RS_RS18105at 244.666 kb on + strand, within RS_RS18105at 244.667 kb on - strand, within RS_RS18105at 244.667 kb on - strand, within RS_RS18105at 244.729 kb on + strand, within RS_RS18105at 244.729 kb on + strand, within RS_RS18105at 244.730 kb on - strand, within RS_RS18105at 244.948 kb on - strand, within RS_RS18105at 245.314 kb on + strand, within RS_RS18105at 245.315 kb on - strand, within RS_RS18105at 245.330 kb on - strand, within RS_RS18105at 245.488 kb on + strand, within RS_RS18105at 245.488 kb on + strand, within RS_RS18105at 245.489 kb on - strand, within RS_RS18105at 245.489 kb on - strand, within RS_RS18105at 245.661 kb on - strand, within RS_RS18105at 245.674 kb on + strand, within RS_RS18105at 245.675 kb on - strand, within RS_RS18105at 245.827 kb on + strand, within RS_RS18105at 246.086 kb on - strand, within RS_RS18105at 246.145 kb on + strand, within RS_RS18105at 246.185 kb on - strand, within RS_RS18105at 246.185 kb on - strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.202 kb on + strand, within RS_RS18105at 246.203 kb on - strand, within RS_RS18105at 246.259 kb on + strand, within RS_RS18105at 246.260 kb on - strand, within RS_RS18105at 246.439 kb on + strand, within RS_RS18105at 246.439 kb on + strand, within RS_RS18105at 246.649 kb on + strandat 246.649 kb on + strandat 246.649 kb on + strandat 246.649 kb on + strandat 246.650 kb on - strandat 246.837 kb on - strandat 246.837 kb on - strandat 246.837 kb on - strandat 247.110 kb on + strandat 247.126 kb on - strand, within RS_RS18110at 247.126 kb on - strand, within RS_RS18110at 247.161 kb on + strand, within RS_RS18110at 247.161 kb on + strand, within RS_RS18110at 247.162 kb on - strand, within RS_RS18110at 247.162 kb on - strand, within RS_RS18110at 247.302 kb on + strand, within RS_RS18110at 247.302 kb on + strand, within RS_RS18110at 247.303 kb on - strand, within RS_RS18110at 247.416 kb on + strand, within RS_RS18110at 247.428 kb on + strand, within RS_RS18110at 247.435 kb on - strand, within RS_RS18110at 247.684 kb on + strand, within RS_RS18110at 247.685 kb on - strand, within RS_RS18110at 247.827 kb on + strand, within RS_RS18110at 247.827 kb on + strand, within RS_RS18110at 247.828 kb on - strand, within RS_RS18110

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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243,483 + +0.0
243,483 + -0.6
243,535 - +0.0
243,535 - -0.4
243,544 + +0.0
243,570 + +0.3
243,655 + RS_RS18100 0.12 +1.1
243,655 + RS_RS18100 0.12 +0.8
243,655 + RS_RS18100 0.12 -0.2
243,656 - RS_RS18100 0.12 +1.4
243,785 - RS_RS18100 0.35 -0.3
243,849 + RS_RS18100 0.47 +0.2
243,849 + RS_RS18100 0.47 +0.8
243,850 - RS_RS18100 0.47 -0.1
243,850 - RS_RS18100 0.47 +0.4
243,871 + RS_RS18100 0.51 -0.8
243,871 + RS_RS18100 0.51 -0.6
243,872 - RS_RS18100 0.51 +0.9
243,901 + RS_RS18100 0.56 -0.9
243,901 + RS_RS18100 0.56 -0.4
243,901 + RS_RS18100 0.56 -1.2
243,901 + RS_RS18100 0.56 +0.2
243,902 - RS_RS18100 0.56 -0.8
243,902 - RS_RS18100 0.56 -0.1
243,902 - RS_RS18100 0.56 -1.5
243,902 - RS_RS18100 0.56 +0.2
243,902 - RS_RS18100 0.56 +0.0
243,902 - RS_RS18100 0.56 +1.4
243,902 - RS_RS18100 0.56 -0.2
243,903 + RS_RS18100 0.57 -0.1
243,903 + RS_RS18100 0.57 -2.0
244,123 + +0.0
244,123 + -1.2
244,124 - -1.2
244,598 - RS_RS18105 0.10 -0.8
244,666 + RS_RS18105 0.13 -2.7
244,666 + RS_RS18105 0.13 +0.1
244,666 + RS_RS18105 0.13 -0.6
244,667 - RS_RS18105 0.13 +0.2
244,667 - RS_RS18105 0.13 +0.9
244,729 + RS_RS18105 0.15 -0.0
244,729 + RS_RS18105 0.15 +0.4
244,730 - RS_RS18105 0.15 -2.0
244,948 - RS_RS18105 0.24 +0.1
245,314 + RS_RS18105 0.39 -0.4
245,315 - RS_RS18105 0.39 +0.1
245,330 - RS_RS18105 0.39 +1.4
245,488 + RS_RS18105 0.46 -0.5
245,488 + RS_RS18105 0.46 +0.6
245,489 - RS_RS18105 0.46 +0.8
245,489 - RS_RS18105 0.46 -1.2
245,661 - RS_RS18105 0.53 -1.2
245,674 + RS_RS18105 0.53 -0.4
245,675 - RS_RS18105 0.53 +0.2
245,827 + RS_RS18105 0.59 +0.6
246,086 - RS_RS18105 0.69 +1.4
246,145 + RS_RS18105 0.72 -0.4
246,185 - RS_RS18105 0.73 -0.1
246,185 - RS_RS18105 0.73 -0.3
246,202 + RS_RS18105 0.74 +2.4
246,202 + RS_RS18105 0.74 -0.4
246,202 + RS_RS18105 0.74 +1.4
246,203 - RS_RS18105 0.74 -1.0
246,259 + RS_RS18105 0.76 +2.4
246,260 - RS_RS18105 0.76 -2.2
246,439 + RS_RS18105 0.84 +0.8
246,439 + RS_RS18105 0.84 +0.3
246,649 + -0.1
246,649 + +0.5
246,649 + -0.1
246,649 + -1.3
246,650 - +0.3
246,837 - -1.4
246,837 - -0.2
246,837 - +0.8
247,110 + +0.7
247,126 - RS_RS18110 0.10 +2.4
247,126 - RS_RS18110 0.10 +0.8
247,161 + RS_RS18110 0.12 -0.4
247,161 + RS_RS18110 0.12 -1.4
247,162 - RS_RS18110 0.12 +0.0
247,162 - RS_RS18110 0.12 +1.4
247,302 + RS_RS18110 0.18 -0.3
247,302 + RS_RS18110 0.18 -0.2
247,303 - RS_RS18110 0.18 +0.4
247,416 + RS_RS18110 0.22 -1.5
247,428 + RS_RS18110 0.23 +0.8
247,435 - RS_RS18110 0.23 -1.4
247,684 + RS_RS18110 0.33 +1.2
247,685 - RS_RS18110 0.33 -0.3
247,827 + RS_RS18110 0.39 -1.4
247,827 + RS_RS18110 0.39 -0.2
247,828 - RS_RS18110 0.39 +1.4

Or see this region's nucleotide sequence