Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06370

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06365 and RS_RS06370 are separated by 70 nucleotidesRS_RS06370 and RS_RS06375 are separated by 91 nucleotides RS_RS06365: RS_RS06365 - dihydrolipoyllysine-residue succinyltransferase, at 1,351,621 to 1,352,877 _RS06365 RS_RS06370: RS_RS06370 - dihydrolipoyl dehydrogenase, at 1,352,948 to 1,354,384 _RS06370 RS_RS06375: RS_RS06375 - cell division protein ZapE, at 1,354,476 to 1,355,573 _RS06375 Position (kb) 1352 1353 1354 1355Strain fitness (log2 ratio) -2 -1 0 1at 1354.382 kb on + strandat 1354.382 kb on + strandat 1354.383 kb on - strandat 1354.383 kb on - strandat 1354.657 kb on - strand, within RS_RS06375at 1354.707 kb on + strand, within RS_RS06375

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,354,382 + -0.3
1,354,382 + +0.0
1,354,383 - -0.3
1,354,383 - +0.0
1,354,657 - RS_RS06375 0.16 -2.4
1,354,707 + RS_RS06375 0.21 -2.6

Or see this region's nucleotide sequence