Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03850

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03840 and RS_RS03845 are separated by 16 nucleotidesRS_RS03845 and RS_RS03850 are separated by 219 nucleotidesRS_RS03850 and RS_RS03855 are separated by 28 nucleotides RS_RS03840: RS_RS03840 - DUF3079 domain-containing protein, at 805,347 to 805,553 _RS03840 RS_RS03845: RS_RS03845 - flavin reductase, at 805,570 to 806,145 _RS03845 RS_RS03850: RS_RS03850 - peptide-methionine (S)-S-oxide reductase, at 806,365 to 806,925 _RS03850 RS_RS03855: RS_RS03855 - DUF72 domain-containing protein, at 806,954 to 808,021 _RS03855 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 805.410 kb on + strand, within RS_RS03840at 805.410 kb on + strand, within RS_RS03840at 805.410 kb on + strand, within RS_RS03840at 805.410 kb on + strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.411 kb on - strand, within RS_RS03840at 805.704 kb on - strand, within RS_RS03845at 805.865 kb on + strand, within RS_RS03845at 805.865 kb on + strand, within RS_RS03845at 805.866 kb on - strand, within RS_RS03845at 806.503 kb on + strand, within RS_RS03850at 806.504 kb on - strand, within RS_RS03850at 806.659 kb on + strand, within RS_RS03850at 806.827 kb on + strand, within RS_RS03850at 806.854 kb on + strand, within RS_RS03850at 806.854 kb on + strand, within RS_RS03850at 806.855 kb on - strand, within RS_RS03850at 806.855 kb on - strand, within RS_RS03850at 806.855 kb on - strand, within RS_RS03850at 807.292 kb on - strand, within RS_RS03855at 807.675 kb on + strand, within RS_RS03855at 807.685 kb on - strand, within RS_RS03855at 807.708 kb on + strand, within RS_RS03855at 807.708 kb on + strand, within RS_RS03855at 807.708 kb on + strand, within RS_RS03855at 807.709 kb on - strand, within RS_RS03855at 807.709 kb on - strand, within RS_RS03855at 807.709 kb on - strand, within RS_RS03855at 807.709 kb on - strand, within RS_RS03855at 807.831 kb on + strand, within RS_RS03855

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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805,410 + RS_RS03840 0.30 -0.0
805,410 + RS_RS03840 0.30 -1.6
805,410 + RS_RS03840 0.30 -0.9
805,410 + RS_RS03840 0.30 +0.1
805,411 - RS_RS03840 0.31 -0.5
805,411 - RS_RS03840 0.31 -0.8
805,411 - RS_RS03840 0.31 +0.7
805,411 - RS_RS03840 0.31 +0.0
805,411 - RS_RS03840 0.31 +0.7
805,411 - RS_RS03840 0.31 -0.7
805,411 - RS_RS03840 0.31 +0.0
805,411 - RS_RS03840 0.31 +1.3
805,704 - RS_RS03845 0.23 -2.1
805,865 + RS_RS03845 0.51 -0.3
805,865 + RS_RS03845 0.51 +2.3
805,866 - RS_RS03845 0.51 +0.3
806,503 + RS_RS03850 0.25 -1.8
806,504 - RS_RS03850 0.25 +0.3
806,659 + RS_RS03850 0.52 -1.3
806,827 + RS_RS03850 0.82 +1.3
806,854 + RS_RS03850 0.87 -0.3
806,854 + RS_RS03850 0.87 -0.8
806,855 - RS_RS03850 0.87 +0.7
806,855 - RS_RS03850 0.87 -0.3
806,855 - RS_RS03850 0.87 +1.0
807,292 - RS_RS03855 0.32 -1.2
807,675 + RS_RS03855 0.68 -0.7
807,685 - RS_RS03855 0.68 -0.3
807,708 + RS_RS03855 0.71 +0.1
807,708 + RS_RS03855 0.71 -1.8
807,708 + RS_RS03855 0.71 +0.3
807,709 - RS_RS03855 0.71 -0.3
807,709 - RS_RS03855 0.71 -0.7
807,709 - RS_RS03855 0.71 +0.7
807,709 - RS_RS03855 0.71 -1.0
807,831 + RS_RS03855 0.82 +0.2

Or see this region's nucleotide sequence