Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS26595

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS11360 and RS_RS26595 are separated by 39 nucleotidesRS_RS26595 and RS_RS26600 are separated by 63 nucleotides RS_RS11360: RS_RS11360 - DUF4382 domain-containing protein, at 2,455,243 to 2,456,418 _RS11360 RS_RS26595: RS_RS26595 - hypothetical protein, at 2,456,458 to 2,456,610 _RS26595 RS_RS26600: RS_RS26600 - DDE domain-containing protein, at 2,456,674 to 2,458,061 _RS26600 Position (kb) 2456 2457Strain fitness (log2 ratio) -3 -2 -1 0 1at 2455.613 kb on - strand, within RS_RS11360at 2455.678 kb on + strand, within RS_RS11360at 2455.781 kb on - strand, within RS_RS11360at 2455.873 kb on + strand, within RS_RS11360at 2455.873 kb on + strand, within RS_RS11360at 2455.873 kb on + strand, within RS_RS11360at 2455.972 kb on + strand, within RS_RS11360at 2456.227 kb on + strand, within RS_RS11360at 2456.227 kb on + strand, within RS_RS11360at 2456.269 kb on + strand, within RS_RS11360at 2456.270 kb on - strand, within RS_RS11360at 2456.270 kb on - strand, within RS_RS11360at 2456.324 kb on - strandat 2456.671 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,455,613 - RS_RS11360 0.31 -1.0
2,455,678 + RS_RS11360 0.37 -0.2
2,455,781 - RS_RS11360 0.46 +0.6
2,455,873 + RS_RS11360 0.54 -0.3
2,455,873 + RS_RS11360 0.54 -0.1
2,455,873 + RS_RS11360 0.54 -0.4
2,455,972 + RS_RS11360 0.62 -1.4
2,456,227 + RS_RS11360 0.84 -0.8
2,456,227 + RS_RS11360 0.84 -1.0
2,456,269 + RS_RS11360 0.87 +0.4
2,456,270 - RS_RS11360 0.87 -2.3
2,456,270 - RS_RS11360 0.87 +0.7
2,456,324 - -0.1
2,456,671 - -2.8

Or see this region's nucleotide sequence