Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14690

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14680 and RS_RS14685 are separated by 13 nucleotidesRS_RS14685 and RS_RS14690 are separated by 19 nucleotidesRS_RS14690 and RS_RS14695 are separated by 472 nucleotides RS_RS14680: RS_RS14680 - large conductance mechanosensitive channel protein MscL, at 3,160,747 to 3,161,172 _RS14680 RS_RS14685: RS_RS14685 - Nif3-like dinuclear metal center hexameric protein, at 3,161,186 to 3,161,932 _RS14685 RS_RS14690: RS_RS14690 - PDZ domain-containing protein, at 3,161,952 to 3,163,163 _RS14690 RS_RS14695: RS_RS14695 - porin, at 3,163,636 to 3,164,775 _RS14695 Position (kb) 3161 3162 3163 3164Strain fitness (log2 ratio) -2 -1 0 1at 3161.300 kb on - strand, within RS_RS14685at 3161.361 kb on + strand, within RS_RS14685at 3161.646 kb on + strand, within RS_RS14685at 3161.846 kb on + strand, within RS_RS14685at 3161.846 kb on + strand, within RS_RS14685at 3161.868 kb on + strandat 3161.951 kb on + strandat 3162.330 kb on + strand, within RS_RS14690at 3162.353 kb on - strand, within RS_RS14690at 3162.505 kb on + strand, within RS_RS14690at 3162.506 kb on - strand, within RS_RS14690at 3163.427 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,161,300 - RS_RS14685 0.15 +1.3
3,161,361 + RS_RS14685 0.23 +0.6
3,161,646 + RS_RS14685 0.62 -0.3
3,161,846 + RS_RS14685 0.88 -0.4
3,161,846 + RS_RS14685 0.88 -0.4
3,161,868 + +0.3
3,161,951 + -1.7
3,162,330 + RS_RS14690 0.31 -1.3
3,162,353 - RS_RS14690 0.33 -0.1
3,162,505 + RS_RS14690 0.46 -0.9
3,162,506 - RS_RS14690 0.46 -2.5
3,163,427 - -1.3

Or see this region's nucleotide sequence