Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14305

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14300 and RS_RS14305 are separated by 61 nucleotidesRS_RS14305 and RS_RS14310 are separated by 226 nucleotides RS_RS14300: RS_RS14300 - molybdopterin oxidoreductase family protein, at 3,078,218 to 3,080,314 _RS14300 RS_RS14305: RS_RS14305 - LacI family DNA-binding transcriptional regulator, at 3,080,376 to 3,081,365 _RS14305 RS_RS14310: RS_RS14310 - phosphoenolpyruvate--protein phosphotransferase, at 3,081,592 to 3,084,126 _RS14310 Position (kb) 3080 3081 3082Strain fitness (log2 ratio) -2 -1 0 1 2at 3079.416 kb on + strand, within RS_RS14300at 3079.468 kb on - strand, within RS_RS14300at 3079.468 kb on - strand, within RS_RS14300at 3079.468 kb on - strand, within RS_RS14300at 3079.536 kb on + strand, within RS_RS14300at 3079.864 kb on - strand, within RS_RS14300at 3079.989 kb on + strand, within RS_RS14300at 3079.989 kb on + strand, within RS_RS14300at 3079.996 kb on - strand, within RS_RS14300at 3080.145 kb on + strandat 3080.145 kb on + strandat 3080.146 kb on - strandat 3080.146 kb on - strandat 3080.146 kb on - strandat 3080.176 kb on + strandat 3080.176 kb on + strandat 3080.177 kb on - strandat 3080.366 kb on + strandat 3080.378 kb on - strandat 3081.471 kb on + strandat 3081.471 kb on + strandat 3081.471 kb on + strandat 3081.471 kb on + strandat 3081.472 kb on - strandat 3081.472 kb on - strandat 3081.472 kb on - strandat 3081.484 kb on - strandat 3081.515 kb on - strandat 3081.515 kb on - strandat 3081.712 kb on + strandat 3081.712 kb on + strandat 3081.881 kb on + strand, within RS_RS14310at 3081.882 kb on - strand, within RS_RS14310at 3081.882 kb on - strand, within RS_RS14310

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,079,416 + RS_RS14300 0.57 -0.4
3,079,468 - RS_RS14300 0.60 -0.4
3,079,468 - RS_RS14300 0.60 -1.3
3,079,468 - RS_RS14300 0.60 +0.4
3,079,536 + RS_RS14300 0.63 -2.1
3,079,864 - RS_RS14300 0.78 +0.7
3,079,989 + RS_RS14300 0.84 -0.4
3,079,989 + RS_RS14300 0.84 +0.7
3,079,996 - RS_RS14300 0.85 -0.1
3,080,145 + -0.1
3,080,145 + -0.7
3,080,146 - -0.1
3,080,146 - -0.7
3,080,146 - +0.4
3,080,176 + -0.9
3,080,176 + +0.9
3,080,177 - -0.1
3,080,366 + +0.7
3,080,378 - +1.9
3,081,471 + +0.5
3,081,471 + -1.1
3,081,471 + +0.9
3,081,471 + +0.3
3,081,472 - -1.6
3,081,472 - -0.2
3,081,472 - -0.1
3,081,484 - +0.2
3,081,515 - -1.1
3,081,515 - -1.7
3,081,712 + -1.7
3,081,712 + +0.3
3,081,881 + RS_RS14310 0.11 -0.1
3,081,882 - RS_RS14310 0.11 -0.3
3,081,882 - RS_RS14310 0.11 -0.9

Or see this region's nucleotide sequence