Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06845

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06835 and RS_RS06840 are separated by 106 nucleotidesRS_RS06840 and RS_RS06845 are separated by 96 nucleotidesRS_RS06845 and RS_RS06850 are separated by 51 nucleotidesRS_RS06850 and RS_RS06855 are separated by 152 nucleotides RS_RS06835: RS_RS06835 - malate synthase A, at 1,452,111 to 1,453,691 _RS06835 RS_RS06840: RS_RS06840 - DUF1857 domain-containing protein, at 1,453,798 to 1,454,268 _RS06840 RS_RS06845: RS_RS06845 - MFS transporter, at 1,454,365 to 1,455,828 _RS06845 RS_RS06850: RS_RS06850 - acyl-CoA-binding protein, at 1,455,880 to 1,456,149 _RS06850 RS_RS06855: RS_RS06855 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 1,456,302 to 1,457,033 _RS06855 Position (kb) 1454 1455 1456Strain fitness (log2 ratio) -2 -1 0 1at 1453.386 kb on + strand, within RS_RS06835at 1453.770 kb on + strandat 1454.038 kb on + strand, within RS_RS06840at 1454.038 kb on + strand, within RS_RS06840at 1454.039 kb on - strand, within RS_RS06840at 1454.039 kb on - strand, within RS_RS06840at 1454.039 kb on - strand, within RS_RS06840at 1454.039 kb on - strand, within RS_RS06840at 1454.353 kb on - strandat 1454.692 kb on + strand, within RS_RS06845at 1455.219 kb on - strand, within RS_RS06845at 1455.232 kb on + strand, within RS_RS06845at 1455.233 kb on - strand, within RS_RS06845at 1455.245 kb on - strand, within RS_RS06845at 1455.259 kb on + strand, within RS_RS06845at 1455.259 kb on + strand, within RS_RS06845at 1455.923 kb on + strand, within RS_RS06850at 1455.923 kb on + strand, within RS_RS06850at 1455.924 kb on - strand, within RS_RS06850at 1455.924 kb on - strand, within RS_RS06850at 1455.978 kb on - strand, within RS_RS06850at 1456.058 kb on + strand, within RS_RS06850at 1456.059 kb on - strand, within RS_RS06850at 1456.291 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,453,386 + RS_RS06835 0.81 -2.0
1,453,770 + -2.0
1,454,038 + RS_RS06840 0.51 +0.6
1,454,038 + RS_RS06840 0.51 +1.1
1,454,039 - RS_RS06840 0.51 +0.2
1,454,039 - RS_RS06840 0.51 -1.5
1,454,039 - RS_RS06840 0.51 +0.0
1,454,039 - RS_RS06840 0.51 -0.7
1,454,353 - -2.2
1,454,692 + RS_RS06845 0.22 +0.3
1,455,219 - RS_RS06845 0.58 -0.3
1,455,232 + RS_RS06845 0.59 -0.5
1,455,233 - RS_RS06845 0.59 -0.3
1,455,245 - RS_RS06845 0.60 -2.0
1,455,259 + RS_RS06845 0.61 -0.8
1,455,259 + RS_RS06845 0.61 -1.0
1,455,923 + RS_RS06850 0.16 -0.4
1,455,923 + RS_RS06850 0.16 -0.8
1,455,924 - RS_RS06850 0.16 -1.3
1,455,924 - RS_RS06850 0.16 +0.3
1,455,978 - RS_RS06850 0.36 +1.2
1,456,058 + RS_RS06850 0.66 -2.4
1,456,059 - RS_RS06850 0.66 +0.2
1,456,291 - -0.5

Or see this region's nucleotide sequence