Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06320

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06315 and RS_RS06320 are separated by 51 nucleotidesRS_RS06320 and RS_RS06325 are separated by 104 nucleotidesRS_RS06325 and RS_RS06330 are separated by 172 nucleotides RS_RS06315: RS_RS06315 - PAS domain-containing sensor histidine kinase, at 1,338,867 to 1,340,069 _RS06315 RS_RS06320: RS_RS06320 - nitrogen regulation protein NR(I), at 1,340,121 to 1,341,629 _RS06320 RS_RS06325: RS_RS06325 - hypothetical protein, at 1,341,734 to 1,342,060 _RS06325 RS_RS06330: RS_RS06330 - HAD family hydrolase, at 1,342,233 to 1,343,120 _RS06330 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -1 0 1at 1341.722 kb on + strandat 1341.771 kb on + strand, within RS_RS06325at 1341.772 kb on - strand, within RS_RS06325at 1341.772 kb on - strand, within RS_RS06325at 1341.918 kb on + strand, within RS_RS06325at 1342.043 kb on + strandat 1342.044 kb on - strandat 1342.350 kb on - strand, within RS_RS06330

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,341,722 + +0.4
1,341,771 + RS_RS06325 0.11 +0.4
1,341,772 - RS_RS06325 0.12 +1.2
1,341,772 - RS_RS06325 0.12 -0.5
1,341,918 + RS_RS06325 0.56 +0.4
1,342,043 + -1.0
1,342,044 - -0.6
1,342,350 - RS_RS06330 0.13 +0.2

Or see this region's nucleotide sequence