Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14005

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14000 and RS_RS14005 are separated by 39 nucleotidesRS_RS14005 and RS_RS14010 are separated by 204 nucleotides RS_RS14000: RS_RS14000 - hypothetical protein, at 3,010,000 to 3,011,352 _RS14000 RS_RS14005: RS_RS14005 - Lrp/AsnC family transcriptional regulator, at 3,011,392 to 3,011,868 _RS14005 RS_RS14010: RS_RS14010 - EamA family transporter, at 3,012,073 to 3,012,909 _RS14010 Position (kb) 3011 3012Strain fitness (log2 ratio) -2 -1 0 1at 3010.555 kb on + strand, within RS_RS14000at 3010.555 kb on + strand, within RS_RS14000at 3010.556 kb on - strand, within RS_RS14000at 3010.724 kb on - strand, within RS_RS14000at 3011.023 kb on + strand, within RS_RS14000at 3011.433 kb on - strandat 3011.517 kb on - strand, within RS_RS14005at 3011.517 kb on - strand, within RS_RS14005at 3011.527 kb on - strand, within RS_RS14005at 3011.577 kb on - strand, within RS_RS14005at 3011.840 kb on - strandat 3011.840 kb on - strandat 3011.948 kb on + strandat 3012.263 kb on - strand, within RS_RS14010at 3012.487 kb on + strand, within RS_RS14010at 3012.520 kb on + strand, within RS_RS14010at 3012.520 kb on + strand, within RS_RS14010at 3012.520 kb on + strand, within RS_RS14010at 3012.521 kb on - strand, within RS_RS14010at 3012.522 kb on + strand, within RS_RS14010at 3012.522 kb on + strand, within RS_RS14010at 3012.523 kb on - strand, within RS_RS14010

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,010,555 + RS_RS14000 0.41 -0.8
3,010,555 + RS_RS14000 0.41 +0.4
3,010,556 - RS_RS14000 0.41 -0.0
3,010,724 - RS_RS14000 0.54 -0.7
3,011,023 + RS_RS14000 0.76 -1.4
3,011,433 - +0.5
3,011,517 - RS_RS14005 0.26 -0.5
3,011,517 - RS_RS14005 0.26 -0.6
3,011,527 - RS_RS14005 0.28 -1.1
3,011,577 - RS_RS14005 0.39 -0.1
3,011,840 - -0.4
3,011,840 - -2.3
3,011,948 + +0.1
3,012,263 - RS_RS14010 0.23 +0.3
3,012,487 + RS_RS14010 0.49 -0.2
3,012,520 + RS_RS14010 0.53 -0.6
3,012,520 + RS_RS14010 0.53 -1.2
3,012,520 + RS_RS14010 0.53 +0.2
3,012,521 - RS_RS14010 0.54 -1.0
3,012,522 + RS_RS14010 0.54 -0.2
3,012,522 + RS_RS14010 0.54 -0.8
3,012,523 - RS_RS14010 0.54 +0.2

Or see this region's nucleotide sequence