Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10030

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10020 and RS_RS10025 are separated by 3 nucleotidesRS_RS10025 and RS_RS10030 are separated by 10 nucleotidesRS_RS10030 and RS_RS10035 are separated by 248 nucleotides RS_RS10020: RS_RS10020 - succinate dehydrogenase flavoprotein subunit, at 2,170,809 to 2,172,587 _RS10020 RS_RS10025: RS_RS10025 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,172,591 to 2,172,956 _RS10025 RS_RS10030: RS_RS10030 - succinate dehydrogenase, cytochrome b556 subunit, at 2,172,967 to 2,173,377 _RS10030 RS_RS10035: RS_RS10035 - GntR family transcriptional regulator, at 2,173,626 to 2,174,432 _RS10035 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -1 0 1at 2173.561 kb on - strandat 2173.646 kb on - strandat 2173.667 kb on - strandat 2174.225 kb on - strand, within RS_RS10035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,173,561 - -1.1
2,173,646 - +0.8
2,173,667 - +0.8
2,174,225 - RS_RS10035 0.74 -0.8

Or see this region's nucleotide sequence