Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07865

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07855 and RS_RS07860 are separated by 25 nucleotidesRS_RS07860 and RS_RS07865 overlap by 1 nucleotidesRS_RS07865 and RS_RS07870 are separated by 237 nucleotidesRS_RS07870 and RS_RS07875 are separated by 115 nucleotides RS_RS07855: RS_RS07855 - DUF962 domain-containing protein, at 1,675,859 to 1,676,176 _RS07855 RS_RS07860: RS_RS07860 - alpha/beta hydrolase, at 1,676,202 to 1,677,026 _RS07860 RS_RS07865: RS_RS07865 - O-acetylhomoserine aminocarboxypropyltransferase, at 1,677,026 to 1,678,360 _RS07865 RS_RS07870: RS_RS07870 - CBS domain-containing protein, at 1,678,598 to 1,679,053 _RS07870 RS_RS07875: RS_RS07875 - MFS transporter, at 1,679,169 to 1,681,076 _RS07875 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -3 -2 -1 0 1at 1676.122 kb on - strand, within RS_RS07855at 1676.124 kb on + strand, within RS_RS07855at 1676.124 kb on + strand, within RS_RS07855at 1676.124 kb on + strand, within RS_RS07855at 1676.432 kb on - strand, within RS_RS07860at 1676.990 kb on - strandat 1677.012 kb on + strandat 1677.012 kb on + strandat 1677.012 kb on + strandat 1677.013 kb on - strandat 1677.013 kb on - strandat 1677.408 kb on + strand, within RS_RS07865at 1677.639 kb on + strand, within RS_RS07865at 1677.705 kb on - strand, within RS_RS07865at 1677.756 kb on + strand, within RS_RS07865at 1677.757 kb on - strand, within RS_RS07865at 1677.806 kb on - strand, within RS_RS07865at 1678.197 kb on + strand, within RS_RS07865at 1678.399 kb on + strandat 1678.400 kb on - strandat 1678.535 kb on + strandat 1678.641 kb on - strandat 1678.952 kb on + strand, within RS_RS07870at 1679.012 kb on + strandat 1679.012 kb on + strandat 1679.013 kb on - strandat 1679.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,676,122 - RS_RS07855 0.83 -0.4
1,676,124 + RS_RS07855 0.83 -0.1
1,676,124 + RS_RS07855 0.83 +0.3
1,676,124 + RS_RS07855 0.83 +0.2
1,676,432 - RS_RS07860 0.28 +0.1
1,676,990 - +1.2
1,677,012 + +0.6
1,677,012 + -0.6
1,677,012 + -0.4
1,677,013 - +0.8
1,677,013 - +0.1
1,677,408 + RS_RS07865 0.29 +0.1
1,677,639 + RS_RS07865 0.46 +1.2
1,677,705 - RS_RS07865 0.51 -2.1
1,677,756 + RS_RS07865 0.55 +0.2
1,677,757 - RS_RS07865 0.55 -2.8
1,677,806 - RS_RS07865 0.58 +0.5
1,678,197 + RS_RS07865 0.88 +0.2
1,678,399 + +0.4
1,678,400 - +1.2
1,678,535 + +1.2
1,678,641 - -1.5
1,678,952 + RS_RS07870 0.78 +1.1
1,679,012 + -0.7
1,679,012 + -0.4
1,679,013 - +0.0
1,679,293 - +0.1

Or see this region's nucleotide sequence