Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06875

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06870 and RS_RS06875 are separated by 630 nucleotidesRS_RS06875 and RS_RS06880 are separated by 79 nucleotides RS_RS06870: RS_RS06870 - lysophospholipid transporter LplT, at 1,458,633 to 1,459,949 _RS06870 RS_RS06875: RS_RS06875 - alanine racemase, at 1,460,580 to 1,461,707 _RS06875 RS_RS06880: RS_RS06880 - DNA repair protein RadA, at 1,461,787 to 1,463,157 _RS06880 Position (kb) 1460 1461 1462Strain fitness (log2 ratio) -2 -1 0 1 2at 1459.622 kb on - strand, within RS_RS06870at 1459.666 kb on + strand, within RS_RS06870at 1459.798 kb on + strand, within RS_RS06870at 1459.933 kb on + strandat 1459.934 kb on - strandat 1459.934 kb on - strandat 1459.934 kb on - strandat 1459.934 kb on - strandat 1460.228 kb on + strandat 1460.228 kb on + strandat 1460.229 kb on - strandat 1460.229 kb on - strandat 1460.236 kb on - strandat 1460.330 kb on + strandat 1460.331 kb on - strandat 1460.360 kb on + strandat 1460.361 kb on - strandat 1460.361 kb on - strandat 1460.455 kb on + strandat 1460.514 kb on - strandat 1461.216 kb on + strandat 1461.810 kb on + strandat 1461.810 kb on + strandat 1461.810 kb on + strandat 1461.811 kb on - strandat 1462.483 kb on - strand, within RS_RS06880

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,459,622 - RS_RS06870 0.75 -2.2
1,459,666 + RS_RS06870 0.78 +1.2
1,459,798 + RS_RS06870 0.88 -1.1
1,459,933 + -1.6
1,459,934 - -1.3
1,459,934 - -1.1
1,459,934 - -1.1
1,459,934 - -1.6
1,460,228 + -0.4
1,460,228 + -0.9
1,460,229 - -0.0
1,460,229 - +0.3
1,460,236 - +1.8
1,460,330 + -0.7
1,460,331 - +0.7
1,460,360 + +2.6
1,460,361 - -1.6
1,460,361 - +0.8
1,460,455 + -0.9
1,460,514 - -0.3
1,461,216 + -0.8
1,461,810 + +1.2
1,461,810 + -0.0
1,461,810 + +0.3
1,461,811 - +0.5
1,462,483 - RS_RS06880 0.51 -2.3

Or see this region's nucleotide sequence