Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06655

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06650 and RS_RS06655 are separated by 90 nucleotidesRS_RS06655 and RS_RS06660 are separated by 31 nucleotides RS_RS06650: RS_RS06650 - pyridoxal phosphate-dependent aminotransferase, at 1,411,206 to 1,412,447 _RS06650 RS_RS06655: RS_RS06655 - homoserine dehydrogenase, at 1,412,538 to 1,413,857 _RS06655 RS_RS06660: RS_RS06660 - threonine synthase, at 1,413,889 to 1,415,334 _RS06660 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1411.641 kb on + strand, within RS_RS06650at 1411.758 kb on + strand, within RS_RS06650at 1411.929 kb on + strand, within RS_RS06650at 1412.145 kb on + strand, within RS_RS06650at 1412.202 kb on + strand, within RS_RS06650at 1412.232 kb on + strand, within RS_RS06650

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,411,641 + RS_RS06650 0.35 -3.3
1,411,758 + RS_RS06650 0.44 -4.5
1,411,929 + RS_RS06650 0.58 -4.6
1,412,145 + RS_RS06650 0.76 -4.3
1,412,202 + RS_RS06650 0.80 -4.4
1,412,232 + RS_RS06650 0.83 -5.1

Or see this region's nucleotide sequence