Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00120

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00110 and RS_RS00115 are separated by 49 nucleotidesRS_RS00115 and RS_RS00120 are separated by 85 nucleotidesRS_RS00120 and RS_RS00125 are separated by 165 nucleotidesRS_RS00125 and RS_RS00130 are separated by 226 nucleotides RS_RS00110: RS_RS00110 - carbon starvation protein A, at 26,383 to 28,443 _RS00110 RS_RS00115: RS_RS00115 - DUF466 domain-containing protein, at 28,493 to 28,687 _RS00115 RS_RS00120: RS_RS00120 - sel1 repeat family protein, at 28,773 to 29,531 _RS00120 RS_RS00125: RS_RS00125 - hypothetical protein, at 29,697 to 30,218 _RS00125 RS_RS00130: RS_RS00130 - methionine biosynthesis protein MetW, at 30,445 to 31,092 _RS00130 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.958 kb on + strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.959 kb on - strand, within RS_RS00110at 27.968 kb on - strand, within RS_RS00110at 28.002 kb on + strand, within RS_RS00110at 28.003 kb on - strand, within RS_RS00110at 28.100 kb on - strand, within RS_RS00110at 28.355 kb on - strandat 28.418 kb on - strandat 28.418 kb on - strandat 28.565 kb on + strand, within RS_RS00115at 28.565 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.574 kb on + strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.575 kb on - strand, within RS_RS00115at 28.622 kb on + strand, within RS_RS00115at 28.622 kb on + strand, within RS_RS00115at 28.623 kb on - strand, within RS_RS00115at 28.658 kb on + strand, within RS_RS00115at 28.658 kb on + strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.659 kb on - strand, within RS_RS00115at 28.704 kb on + strandat 28.774 kb on + strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.775 kb on - strandat 28.823 kb on - strandat 28.951 kb on + strand, within RS_RS00120at 28.951 kb on + strand, within RS_RS00120at 28.952 kb on - strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.966 kb on + strand, within RS_RS00120at 28.967 kb on - strand, within RS_RS00120at 28.967 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.057 kb on - strand, within RS_RS00120at 29.114 kb on - strand, within RS_RS00120at 29.114 kb on - strand, within RS_RS00120at 29.176 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.284 kb on + strand, within RS_RS00120at 29.285 kb on - strand, within RS_RS00120at 29.285 kb on - strand, within RS_RS00120at 29.744 kb on + strandat 29.811 kb on - strand, within RS_RS00125at 29.869 kb on + strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.966 kb on - strand, within RS_RS00125at 29.981 kb on - strand, within RS_RS00125at 30.137 kb on + strand, within RS_RS00125at 30.219 kb on + strandat 30.219 kb on + strandat 30.220 kb on - strandat 30.265 kb on + strandat 30.266 kb on - strandat 30.275 kb on + strandat 30.275 kb on + strandat 30.375 kb on - strandat 30.378 kb on + strandat 30.379 kb on - strandat 30.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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27,958 + RS_RS00110 0.76 +0.8
27,959 - RS_RS00110 0.76 -0.1
27,959 - RS_RS00110 0.76 -0.9
27,959 - RS_RS00110 0.76 +0.4
27,968 - RS_RS00110 0.77 +0.2
28,002 + RS_RS00110 0.79 +0.3
28,003 - RS_RS00110 0.79 -3.7
28,100 - RS_RS00110 0.83 +0.8
28,355 - +0.2
28,418 - +1.8
28,418 - -0.4
28,565 + RS_RS00115 0.37 -0.4
28,565 + RS_RS00115 0.37 +0.1
28,574 + RS_RS00115 0.42 +0.8
28,574 + RS_RS00115 0.42 -0.5
28,574 + RS_RS00115 0.42 -0.8
28,574 + RS_RS00115 0.42 +0.1
28,574 + RS_RS00115 0.42 -0.8
28,574 + RS_RS00115 0.42 +2.1
28,574 + RS_RS00115 0.42 +0.3
28,574 + RS_RS00115 0.42 +0.9
28,574 + RS_RS00115 0.42 -0.4
28,574 + RS_RS00115 0.42 +0.4
28,575 - RS_RS00115 0.42 +1.3
28,575 - RS_RS00115 0.42 -1.0
28,575 - RS_RS00115 0.42 +1.8
28,575 - RS_RS00115 0.42 +0.0
28,575 - RS_RS00115 0.42 +0.2
28,575 - RS_RS00115 0.42 +1.8
28,575 - RS_RS00115 0.42 +0.7
28,575 - RS_RS00115 0.42 +0.2
28,575 - RS_RS00115 0.42 -0.3
28,622 + RS_RS00115 0.66 +0.8
28,622 + RS_RS00115 0.66 +0.0
28,623 - RS_RS00115 0.67 +0.4
28,658 + RS_RS00115 0.85 -0.2
28,658 + RS_RS00115 0.85 +0.8
28,659 - RS_RS00115 0.85 -0.2
28,659 - RS_RS00115 0.85 -0.2
28,659 - RS_RS00115 0.85 +0.8
28,704 + +0.3
28,774 + +0.4
28,775 - -0.1
28,775 - -0.9
28,775 - +0.2
28,775 - +0.5
28,775 - +0.4
28,823 - -0.0
28,951 + RS_RS00120 0.23 +0.8
28,951 + RS_RS00120 0.23 +0.0
28,952 - RS_RS00120 0.24 +0.2
28,966 + RS_RS00120 0.25 +1.1
28,966 + RS_RS00120 0.25 -0.8
28,966 + RS_RS00120 0.25 -0.2
28,966 + RS_RS00120 0.25 +0.2
28,966 + RS_RS00120 0.25 +0.3
28,967 - RS_RS00120 0.26 -1.4
28,967 - RS_RS00120 0.26 +0.1
29,057 - RS_RS00120 0.37 +0.9
29,057 - RS_RS00120 0.37 -0.7
29,057 - RS_RS00120 0.37 +1.8
29,057 - RS_RS00120 0.37 +0.2
29,114 - RS_RS00120 0.45 +1.0
29,114 - RS_RS00120 0.45 +0.4
29,176 + RS_RS00120 0.53 +0.4
29,284 + RS_RS00120 0.67 +0.1
29,284 + RS_RS00120 0.67 -0.2
29,284 + RS_RS00120 0.67 -0.5
29,284 + RS_RS00120 0.67 +0.8
29,285 - RS_RS00120 0.67 -0.5
29,285 - RS_RS00120 0.67 +0.5
29,744 + +0.3
29,811 - RS_RS00125 0.22 -0.5
29,869 + RS_RS00125 0.33 +1.8
29,870 - RS_RS00125 0.33 +0.5
29,870 - RS_RS00125 0.33 +0.2
29,870 - RS_RS00125 0.33 +0.2
29,870 - RS_RS00125 0.33 -0.0
29,966 - RS_RS00125 0.52 +0.3
29,981 - RS_RS00125 0.54 +0.3
30,137 + RS_RS00125 0.84 +0.7
30,219 + +0.7
30,219 + +0.2
30,220 - +1.1
30,265 + -0.4
30,266 - -0.3
30,275 + -0.2
30,275 + -0.2
30,375 - +1.8
30,378 + -1.5
30,379 - -0.4
30,396 - -0.6

Or see this region's nucleotide sequence