Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS11150

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS11145 and RS_RS11150 are separated by 240 nucleotidesRS_RS11150 and RS_RS11155 are separated by 58 nucleotidesRS_RS11155 and RS_RS11160 overlap by 4 nucleotides RS_RS11145: RS_RS11145 - GTP cyclohydrolase I FolE2, at 2,407,469 to 2,408,275 _RS11145 RS_RS11150: RS_RS11150 - 1-deoxy-D-xylulose-5-phosphate synthase, at 2,408,516 to 2,410,426 _RS11150 RS_RS11155: RS_RS11155 - polyprenyl synthetase family protein, at 2,410,485 to 2,411,384 _RS11155 RS_RS11160: RS_RS11160 - exodeoxyribonuclease 7 small subunit, at 2,411,381 to 2,411,665 _RS11160 Position (kb) 2408 2409 2410 2411Strain fitness (log2 ratio) -1 0 1at 2410.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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2,410,464 - -0.3

Or see this region's nucleotide sequence