Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06300

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06290 and RS_RS06295 are separated by 16 nucleotidesRS_RS06295 and RS_RS06300 are separated by 118 nucleotidesRS_RS06300 and RS_RS06305 are separated by 454 nucleotides RS_RS06290: RS_RS06290 - membrane protein, at 1,334,027 to 1,334,884 _RS06290 RS_RS06295: RS_RS06295 - competence/damage-inducible protein A, at 1,334,901 to 1,335,719 _RS06295 RS_RS06300: RS_RS06300 - rhodanese-like domain-containing protein, at 1,335,838 to 1,336,314 _RS06300 RS_RS06305: RS_RS06305 - type I glutamate--ammonia ligase, at 1,336,769 to 1,338,184 _RS06305 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -2 -1 0 1at 1335.021 kb on + strand, within RS_RS06295at 1335.321 kb on + strand, within RS_RS06295at 1335.321 kb on + strand, within RS_RS06295at 1335.322 kb on - strand, within RS_RS06295at 1335.413 kb on + strand, within RS_RS06295at 1335.417 kb on + strand, within RS_RS06295at 1335.646 kb on - strandat 1336.239 kb on - strand, within RS_RS06300at 1336.413 kb on + strandat 1336.414 kb on - strandat 1336.568 kb on + strandat 1336.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,335,021 + RS_RS06295 0.15 -0.6
1,335,321 + RS_RS06295 0.51 -2.7
1,335,321 + RS_RS06295 0.51 -1.3
1,335,322 - RS_RS06295 0.51 -0.2
1,335,413 + RS_RS06295 0.63 -0.0
1,335,417 + RS_RS06295 0.63 +0.3
1,335,646 - +0.4
1,336,239 - RS_RS06300 0.84 -1.2
1,336,413 + -1.5
1,336,414 - -0.2
1,336,568 + -2.1
1,336,568 + +1.3

Or see this region's nucleotide sequence