Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05910

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS05880 and RS_RS05885 are separated by 113 nucleotidesRS_RS05885 and RS_RS05890 are separated by 116 nucleotidesRS_RS05890 and RS_RS05895 are separated by 64 nucleotidesRS_RS05895 and RS_RS05900 are separated by 60 nucleotidesRS_RS05900 and RS_RS05905 are separated by 116 nucleotidesRS_RS05905 and RS_RS05910 are separated by 64 nucleotidesRS_RS05910 and RS_RS05915 are separated by 99 nucleotides RS_RS05880: RS_RS05880 - glutamate--tRNA ligase, at 1,240,064 to 1,241,461 _RS05880 RS_RS05885: RS_RS05885 - tRNA-Ala, at 1,241,575 to 1,241,650 _RS05885 RS_RS05890: RS_RS05890 - tRNA-Glu, at 1,241,767 to 1,241,842 _RS05890 RS_RS05895: RS_RS05895 - tRNA-Asp, at 1,241,907 to 1,241,983 _RS05895 RS_RS05900: RS_RS05900 - tRNA-Ala, at 1,242,044 to 1,242,119 _RS05900 RS_RS05905: RS_RS05905 - tRNA-Glu, at 1,242,236 to 1,242,311 _RS05905 RS_RS05910: RS_RS05910 - tRNA-Asp, at 1,242,376 to 1,242,452 _RS05910 RS_RS05915: RS_RS05915 - MATE family efflux transporter, at 1,242,552 to 1,243,898 _RS05915 Position (kb) 1242 1243Strain fitness (log2 ratio) -1 0 1at 1242.583 kb on + strandat 1242.697 kb on + strand, within RS_RS05915at 1242.737 kb on - strand, within RS_RS05915at 1242.766 kb on + strand, within RS_RS05915at 1242.817 kb on + strand, within RS_RS05915at 1243.053 kb on - strand, within RS_RS05915at 1243.054 kb on + strand, within RS_RS05915at 1243.054 kb on + strand, within RS_RS05915at 1243.055 kb on - strand, within RS_RS05915at 1243.055 kb on - strand, within RS_RS05915at 1243.377 kb on + strand, within RS_RS05915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
1,242,583 + -0.3
1,242,697 + RS_RS05915 0.11 +0.1
1,242,737 - RS_RS05915 0.14 +0.1
1,242,766 + RS_RS05915 0.16 -0.3
1,242,817 + RS_RS05915 0.20 -0.9
1,243,053 - RS_RS05915 0.37 +1.0
1,243,054 + RS_RS05915 0.37 -0.2
1,243,054 + RS_RS05915 0.37 -0.6
1,243,055 - RS_RS05915 0.37 -0.7
1,243,055 - RS_RS05915 0.37 +0.4
1,243,377 + RS_RS05915 0.61 -1.7

Or see this region's nucleotide sequence