Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05880 and RS_RS05885 are separated by 113 nucleotides RS_RS05885 and RS_RS05890 are separated by 116 nucleotides RS_RS05890 and RS_RS05895 are separated by 64 nucleotides RS_RS05895 and RS_RS05900 are separated by 60 nucleotides RS_RS05900 and RS_RS05905 are separated by 116 nucleotides RS_RS05905 and RS_RS05910 are separated by 64 nucleotides RS_RS05910 and RS_RS05915 are separated by 99 nucleotides
RS_RS05880: RS_RS05880 - glutamate--tRNA ligase, at 1,240,064 to 1,241,461
_RS05880
RS_RS05885: RS_RS05885 - tRNA-Ala, at 1,241,575 to 1,241,650
_RS05885
RS_RS05890: RS_RS05890 - tRNA-Glu, at 1,241,767 to 1,241,842
_RS05890
RS_RS05895: RS_RS05895 - tRNA-Asp, at 1,241,907 to 1,241,983
_RS05895
RS_RS05900: RS_RS05900 - tRNA-Ala, at 1,242,044 to 1,242,119
_RS05900
RS_RS05905: RS_RS05905 - tRNA-Glu, at 1,242,236 to 1,242,311
_RS05905
RS_RS05910: RS_RS05910 - tRNA-Asp, at 1,242,376 to 1,242,452
_RS05910
RS_RS05915: RS_RS05915 - MATE family efflux transporter, at 1,242,552 to 1,243,898
_RS05915
Position (kb)
1242
1243 Strain fitness (log2 ratio)
-1
0
1 at 1242.583 kb on + strand at 1242.697 kb on + strand, within RS_RS05915 at 1242.737 kb on - strand, within RS_RS05915 at 1242.766 kb on + strand, within RS_RS05915 at 1242.817 kb on + strand, within RS_RS05915 at 1243.053 kb on - strand, within RS_RS05915 at 1243.054 kb on + strand, within RS_RS05915 at 1243.054 kb on + strand, within RS_RS05915 at 1243.055 kb on - strand, within RS_RS05915 at 1243.055 kb on - strand, within RS_RS05915 at 1243.377 kb on + strand, within RS_RS05915
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 1,242,583 + -0.3 1,242,697 + RS_RS05915 0.11 +0.1 1,242,737 - RS_RS05915 0.14 +0.1 1,242,766 + RS_RS05915 0.16 -0.3 1,242,817 + RS_RS05915 0.20 -0.9 1,243,053 - RS_RS05915 0.37 +1.0 1,243,054 + RS_RS05915 0.37 -0.2 1,243,054 + RS_RS05915 0.37 -0.6 1,243,055 - RS_RS05915 0.37 -0.7 1,243,055 - RS_RS05915 0.37 +0.4 1,243,377 + RS_RS05915 0.61 -1.7
Or see this region's nucleotide sequence