Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00265

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00260 and RS_RS00265 are separated by 13 nucleotidesRS_RS00265 and RS_RS00270 overlap by 1 nucleotides RS_RS00260: RS_RS00260 - Tyrosine recombinase XerC 1, at 57,356 to 58,345 _RS00260 RS_RS00265: RS_RS00265 - DUF484 domain-containing protein, at 58,359 to 59,072 _RS00265 RS_RS00270: RS_RS00270 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B, at 59,072 to 60,538 _RS00270 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 57.390 kb on + strandat 57.391 kb on - strandat 57.424 kb on + strandat 57.424 kb on + strandat 57.873 kb on + strand, within RS_RS00260at 57.873 kb on + strand, within RS_RS00260at 57.873 kb on + strand, within RS_RS00260at 57.873 kb on + strand, within RS_RS00260at 58.057 kb on - strand, within RS_RS00260at 58.224 kb on + strand, within RS_RS00260at 58.225 kb on - strand, within RS_RS00260at 58.279 kb on - strandat 58.279 kb on - strandat 58.414 kb on + strandat 58.415 kb on - strandat 58.415 kb on - strandat 58.415 kb on - strandat 58.783 kb on + strand, within RS_RS00265at 59.039 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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57,390 + +0.8
57,391 - -0.2
57,424 + -0.5
57,424 + -0.1
57,873 + RS_RS00260 0.52 +1.8
57,873 + RS_RS00260 0.52 +0.8
57,873 + RS_RS00260 0.52 +0.8
57,873 + RS_RS00260 0.52 -1.3
58,057 - RS_RS00260 0.71 -1.0
58,224 + RS_RS00260 0.88 +0.2
58,225 - RS_RS00260 0.88 -1.8
58,279 - -0.2
58,279 - -0.5
58,414 + +0.2
58,415 - +0.6
58,415 - +1.8
58,415 - +0.2
58,783 + RS_RS00265 0.59 +0.2
59,039 - -1.0

Or see this region's nucleotide sequence