Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06660

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06655 and RS_RS06660 are separated by 31 nucleotidesRS_RS06660 and RS_RS06665 are separated by 5 nucleotidesRS_RS06665 and RS_RS06670 are separated by 79 nucleotides RS_RS06655: RS_RS06655 - homoserine dehydrogenase, at 1,412,538 to 1,413,857 _RS06655 RS_RS06660: RS_RS06660 - threonine synthase, at 1,413,889 to 1,415,334 _RS06660 RS_RS06665: RS_RS06665 - IclR family transcriptional regulator, at 1,415,340 to 1,415,957 _RS06665 RS_RS06670: RS_RS06670 - molybdopterin molybdenumtransferase MoeA, at 1,416,037 to 1,417,296 _RS06670 Position (kb) 1413 1414 1415 1416Strain fitness (log2 ratio) -1 0 1at 1415.333 kb on - strandat 1415.333 kb on - strandat 1415.761 kb on - strand, within RS_RS06665at 1415.764 kb on - strand, within RS_RS06665

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,415,333 - +0.1
1,415,333 - +0.4
1,415,761 - RS_RS06665 0.68 -0.7
1,415,764 - RS_RS06665 0.69 +0.4

Or see this region's nucleotide sequence