Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04590

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04585 and RS_RS04590 are separated by 177 nucleotidesRS_RS04590 and RS_RS04595 are separated by 54 nucleotides RS_RS04585: RS_RS04585 - MetQ/NlpA family ABC transporter substrate-binding protein, at 973,512 to 974,312 _RS04585 RS_RS04590: RS_RS04590 - electron transfer flavoprotein subunit beta/FixA family protein, at 974,490 to 975,239 _RS04590 RS_RS04595: RS_RS04595 - electron transfer flavoprotein subunit alpha, at 975,294 to 976,229 _RS04595 Position (kb) 974 975 976Strain fitness (log2 ratio) -1 0 1at 973.707 kb on + strand, within RS_RS04585at 973.758 kb on + strand, within RS_RS04585at 974.109 kb on + strand, within RS_RS04585at 974.110 kb on - strand, within RS_RS04585at 974.110 kb on - strand, within RS_RS04585at 974.244 kb on + strandat 974.245 kb on - strandat 974.245 kb on - strandat 974.339 kb on + strandat 974.339 kb on + strandat 974.340 kb on - strandat 974.364 kb on + strandat 974.364 kb on + strandat 974.365 kb on - strandat 974.365 kb on - strandat 974.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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973,707 + RS_RS04585 0.24 -0.2
973,758 + RS_RS04585 0.31 +0.6
974,109 + RS_RS04585 0.75 +0.3
974,110 - RS_RS04585 0.75 -0.3
974,110 - RS_RS04585 0.75 +0.4
974,244 + -0.1
974,245 - -1.6
974,245 - -0.3
974,339 + -0.1
974,339 + -0.9
974,340 - +0.6
974,364 + -0.6
974,364 + +0.2
974,365 - +0.9
974,365 - -0.0
974,440 - +0.2

Or see this region's nucleotide sequence