Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24110

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24105 and RS_RS24110 are separated by 3 nucleotidesRS_RS24110 and RS_RS24115 are separated by 223 nucleotides RS_RS24105: RS_RS24105 - pyruvate kinase, at 1,822,773 to 1,824,191 _RS24105 RS_RS24110: RS_RS24110 - glycerate kinase, at 1,824,195 to 1,825,478 _RS24110 RS_RS24115: RS_RS24115 - LysR family transcriptional regulator, at 1,825,702 to 1,826,595 _RS24115 Position (kb) 1824 1825 1826Strain fitness (log2 ratio) -1 0 1 2at 1824.656 kb on + strand, within RS_RS24110at 1824.656 kb on + strand, within RS_RS24110at 1824.667 kb on + strand, within RS_RS24110at 1825.262 kb on - strand, within RS_RS24110at 1825.262 kb on - strand, within RS_RS24110at 1825.262 kb on - strand, within RS_RS24110at 1825.564 kb on + strandat 1825.565 kb on - strandat 1825.587 kb on + strandat 1825.588 kb on - strandat 1825.955 kb on + strand, within RS_RS24115at 1825.955 kb on + strand, within RS_RS24115at 1825.956 kb on - strand, within RS_RS24115at 1826.102 kb on + strand, within RS_RS24115at 1826.102 kb on + strand, within RS_RS24115at 1826.102 kb on + strand, within RS_RS24115at 1826.103 kb on - strand, within RS_RS24115at 1826.159 kb on + strand, within RS_RS24115at 1826.160 kb on - strand, within RS_RS24115at 1826.160 kb on - strand, within RS_RS24115

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,824,656 + RS_RS24110 0.36 -0.5
1,824,656 + RS_RS24110 0.36 +0.7
1,824,667 + RS_RS24110 0.37 -1.5
1,825,262 - RS_RS24110 0.83 -0.7
1,825,262 - RS_RS24110 0.83 +2.3
1,825,262 - RS_RS24110 0.83 +0.0
1,825,564 + -0.4
1,825,565 - +2.0
1,825,587 + +2.3
1,825,588 - +1.3
1,825,955 + RS_RS24115 0.28 -0.8
1,825,955 + RS_RS24115 0.28 +0.7
1,825,956 - RS_RS24115 0.28 +0.7
1,826,102 + RS_RS24115 0.45 +0.0
1,826,102 + RS_RS24115 0.45 +1.5
1,826,102 + RS_RS24115 0.45 +1.3
1,826,103 - RS_RS24115 0.45 +0.3
1,826,159 + RS_RS24115 0.51 +0.0
1,826,160 - RS_RS24115 0.51 -0.3
1,826,160 - RS_RS24115 0.51 +0.2

Or see this region's nucleotide sequence