Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22355

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22345 and RS_RS22350 are separated by 16 nucleotidesRS_RS22350 and RS_RS22355 overlap by 8 nucleotidesRS_RS22355 and RS_RS22360 overlap by 4 nucleotides RS_RS22345: RS_RS22345 - type II secretion system F family protein, at 1,374,548 to 1,375,528 _RS22345 RS_RS22350: RS_RS22350 - membrane protein, at 1,375,545 to 1,376,471 _RS22350 RS_RS22355: RS_RS22355 - CpaF family protein, at 1,376,464 to 1,377,816 _RS22355 RS_RS22360: RS_RS22360 - pilus assembly protein, at 1,377,813 to 1,379,132 _RS22360 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -2 -1 0 1 2at 1375.654 kb on + strand, within RS_RS22350at 1375.655 kb on - strand, within RS_RS22350at 1375.655 kb on - strand, within RS_RS22350at 1375.655 kb on - strand, within RS_RS22350at 1375.880 kb on - strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.128 kb on + strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.129 kb on - strand, within RS_RS22350at 1376.218 kb on + strand, within RS_RS22350at 1376.218 kb on + strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.219 kb on - strand, within RS_RS22350at 1376.612 kb on + strand, within RS_RS22355at 1376.612 kb on + strand, within RS_RS22355at 1376.612 kb on + strand, within RS_RS22355at 1376.612 kb on + strand, within RS_RS22355at 1376.612 kb on + strand, within RS_RS22355at 1376.612 kb on + strand, within RS_RS22355at 1376.613 kb on - strand, within RS_RS22355at 1376.613 kb on - strand, within RS_RS22355at 1376.613 kb on - strand, within RS_RS22355at 1376.613 kb on - strand, within RS_RS22355at 1376.627 kb on + strand, within RS_RS22355at 1376.627 kb on + strand, within RS_RS22355at 1376.814 kb on - strand, within RS_RS22355at 1377.098 kb on + strand, within RS_RS22355at 1377.098 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.470 kb on + strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.471 kb on - strand, within RS_RS22355at 1377.952 kb on + strand, within RS_RS22360at 1377.953 kb on - strand, within RS_RS22360at 1378.529 kb on - strand, within RS_RS22360

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,375,654 + RS_RS22350 0.12 -0.3
1,375,655 - RS_RS22350 0.12 +0.5
1,375,655 - RS_RS22350 0.12 +1.1
1,375,655 - RS_RS22350 0.12 -0.6
1,375,880 - RS_RS22350 0.36 +0.5
1,376,128 + RS_RS22350 0.63 +1.1
1,376,128 + RS_RS22350 0.63 -1.1
1,376,128 + RS_RS22350 0.63 +0.5
1,376,128 + RS_RS22350 0.63 +0.5
1,376,128 + RS_RS22350 0.63 +0.1
1,376,128 + RS_RS22350 0.63 -0.9
1,376,128 + RS_RS22350 0.63 -1.8
1,376,128 + RS_RS22350 0.63 +0.2
1,376,129 - RS_RS22350 0.63 +1.5
1,376,129 - RS_RS22350 0.63 -0.9
1,376,129 - RS_RS22350 0.63 -1.2
1,376,129 - RS_RS22350 0.63 -0.1
1,376,129 - RS_RS22350 0.63 -0.0
1,376,129 - RS_RS22350 0.63 +0.2
1,376,218 + RS_RS22350 0.73 +1.7
1,376,218 + RS_RS22350 0.73 +1.1
1,376,219 - RS_RS22350 0.73 -0.7
1,376,219 - RS_RS22350 0.73 -0.0
1,376,219 - RS_RS22350 0.73 +1.1
1,376,219 - RS_RS22350 0.73 -0.1
1,376,219 - RS_RS22350 0.73 +1.1
1,376,219 - RS_RS22350 0.73 +0.3
1,376,612 + RS_RS22355 0.11 +0.3
1,376,612 + RS_RS22355 0.11 -0.6
1,376,612 + RS_RS22355 0.11 -0.2
1,376,612 + RS_RS22355 0.11 +0.7
1,376,612 + RS_RS22355 0.11 -1.9
1,376,612 + RS_RS22355 0.11 -0.8
1,376,613 - RS_RS22355 0.11 +1.1
1,376,613 - RS_RS22355 0.11 +1.1
1,376,613 - RS_RS22355 0.11 +0.3
1,376,613 - RS_RS22355 0.11 -1.7
1,376,627 + RS_RS22355 0.12 -0.2
1,376,627 + RS_RS22355 0.12 +0.4
1,376,814 - RS_RS22355 0.26 +1.1
1,377,098 + RS_RS22355 0.47 +0.9
1,377,098 + RS_RS22355 0.47 -1.1
1,377,470 + RS_RS22355 0.74 -0.0
1,377,470 + RS_RS22355 0.74 -0.6
1,377,470 + RS_RS22355 0.74 -0.5
1,377,470 + RS_RS22355 0.74 +0.2
1,377,470 + RS_RS22355 0.74 +1.4
1,377,470 + RS_RS22355 0.74 +0.9
1,377,470 + RS_RS22355 0.74 +2.1
1,377,470 + RS_RS22355 0.74 +1.0
1,377,470 + RS_RS22355 0.74 -0.3
1,377,470 + RS_RS22355 0.74 -2.3
1,377,471 - RS_RS22355 0.74 -1.1
1,377,471 - RS_RS22355 0.74 +0.4
1,377,471 - RS_RS22355 0.74 -0.2
1,377,471 - RS_RS22355 0.74 -0.1
1,377,471 - RS_RS22355 0.74 +2.1
1,377,471 - RS_RS22355 0.74 +1.1
1,377,471 - RS_RS22355 0.74 -0.9
1,377,471 - RS_RS22355 0.74 +1.1
1,377,471 - RS_RS22355 0.74 -0.5
1,377,471 - RS_RS22355 0.74 -0.1
1,377,952 + RS_RS22360 0.11 +1.1
1,377,953 - RS_RS22360 0.11 +1.1
1,378,529 - RS_RS22360 0.54 -1.1

Or see this region's nucleotide sequence