Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13730

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13720 and RS_RS13725 are separated by 24 nucleotidesRS_RS13725 and RS_RS13730 are separated by 39 nucleotidesRS_RS13730 and RS_RS13735 are separated by 178 nucleotides RS_RS13720: RS_RS13720 - DNA polymerase III subunit delta, at 2,951,677 to 2,952,753 _RS13720 RS_RS13725: RS_RS13725 - hypothetical protein, at 2,952,778 to 2,953,287 _RS13725 RS_RS13730: RS_RS13730 - leucine--tRNA ligase, at 2,953,327 to 2,955,960 _RS13730 RS_RS13735: RS_RS13735 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,956,139 to 2,956,930 _RS13735 Position (kb) 2953 2954 2955 2956Strain fitness (log2 ratio) -1 0 1 2 3at 2956.056 kb on - strandat 2956.058 kb on - strandat 2956.140 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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2,956,056 - -0.1
2,956,058 - +0.7
2,956,140 + +3.3

Or see this region's nucleotide sequence