Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08275 and RS_RS08280 are separated by 171 nucleotides RS_RS08280 and RS_RS08285 overlap by 4 nucleotides RS_RS08285 and RS_RS08290 are separated by 79 nucleotides RS_RS08290 and RS_RS08295 are separated by 58 nucleotides
RS_RS08275: RS_RS08275 - transcription-repair coupling factor, at 1,764,304 to 1,767,735
_RS08275
RS_RS08280: RS_RS08280 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,767,907 to 1,768,668
_RS08280
RS_RS08285: RS_RS08285 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,768,665 to 1,769,171
_RS08285
RS_RS08290: RS_RS08290 - carboxymuconolactone decarboxylase family protein, at 1,769,251 to 1,769,778
_RS08290
RS_RS08295: RS_RS08295 - peroxiredoxin, at 1,769,837 to 1,770,385
_RS08295
Position (kb)
1768
1769
1770 Strain fitness (log2 ratio)
-2
-1
0
1 at 1767.819 kb on + strand at 1769.253 kb on - strand at 1769.253 kb on - strand at 1769.363 kb on + strand, within RS_RS08290 at 1769.417 kb on + strand, within RS_RS08290 at 1769.417 kb on + strand, within RS_RS08290 at 1769.418 kb on - strand, within RS_RS08290 at 1769.418 kb on - strand, within RS_RS08290 at 1769.418 kb on - strand, within RS_RS08290 at 1769.418 kb on - strand, within RS_RS08290 at 1769.418 kb on - strand, within RS_RS08290 at 1769.459 kb on + strand, within RS_RS08290 at 1769.523 kb on - strand, within RS_RS08290
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 1,767,819 + -0.9 1,769,253 - +0.4 1,769,253 - -2.1 1,769,363 + RS_RS08290 0.21 -0.8 1,769,417 + RS_RS08290 0.31 +0.4 1,769,417 + RS_RS08290 0.31 +0.1 1,769,418 - RS_RS08290 0.32 +0.0 1,769,418 - RS_RS08290 0.32 -0.6 1,769,418 - RS_RS08290 0.32 +0.7 1,769,418 - RS_RS08290 0.32 -0.3 1,769,418 - RS_RS08290 0.32 +1.0 1,769,459 + RS_RS08290 0.39 +0.1 1,769,523 - RS_RS08290 0.52 -0.0
Or see this region's nucleotide sequence