Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08245

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS08240 and RS_RS08245 are separated by 66 nucleotidesRS_RS08245 and RS_RS08250 are separated by 95 nucleotides RS_RS08240: RS_RS08240 - tRNA-dihydrouridine synthase C, at 1,756,422 to 1,757,402 _RS08240 RS_RS08245: RS_RS08245 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,757,469 to 1,758,830 _RS08245 RS_RS08250: RS_RS08250 - acetyl-CoA C-acyltransferase, at 1,758,926 to 1,760,110 _RS08250 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1 2at 1756.560 kb on + strand, within RS_RS08240at 1756.561 kb on - strand, within RS_RS08240at 1756.863 kb on - strand, within RS_RS08240at 1757.199 kb on + strand, within RS_RS08240at 1757.400 kb on + strandat 1757.595 kb on + strandat 1757.596 kb on - strandat 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.828 kb on + strand, within RS_RS08245at 1757.829 kb on - strand, within RS_RS08245at 1757.829 kb on - strand, within RS_RS08245at 1757.829 kb on - strand, within RS_RS08245at 1757.829 kb on - strand, within RS_RS08245at 1757.829 kb on - strand, within RS_RS08245at 1757.910 kb on + strand, within RS_RS08245at 1757.911 kb on - strand, within RS_RS08245at 1758.205 kb on - strand, within RS_RS08245at 1758.210 kb on + strand, within RS_RS08245at 1758.271 kb on - strand, within RS_RS08245at 1758.271 kb on - strand, within RS_RS08245at 1758.502 kb on - strand, within RS_RS08245at 1758.726 kb on + strandat 1758.884 kb on + strandat 1758.884 kb on + strandat 1758.886 kb on + strandat 1759.121 kb on + strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,756,560 + RS_RS08240 0.14 -0.3
1,756,561 - RS_RS08240 0.14 +0.1
1,756,863 - RS_RS08240 0.45 +0.7
1,757,199 + RS_RS08240 0.79 +0.6
1,757,400 + +1.0
1,757,595 + -0.9
1,757,596 - -1.2
1,757,828 + RS_RS08245 0.26 +0.1
1,757,828 + RS_RS08245 0.26 +2.0
1,757,828 + RS_RS08245 0.26 -0.6
1,757,828 + RS_RS08245 0.26 +0.0
1,757,828 + RS_RS08245 0.26 -1.3
1,757,828 + RS_RS08245 0.26 +1.0
1,757,828 + RS_RS08245 0.26 +0.4
1,757,828 + RS_RS08245 0.26 +0.2
1,757,829 - RS_RS08245 0.26 -2.2
1,757,829 - RS_RS08245 0.26 -0.4
1,757,829 - RS_RS08245 0.26 -0.1
1,757,829 - RS_RS08245 0.26 -1.0
1,757,829 - RS_RS08245 0.26 +2.0
1,757,910 + RS_RS08245 0.32 -0.1
1,757,911 - RS_RS08245 0.32 -0.3
1,758,205 - RS_RS08245 0.54 -1.2
1,758,210 + RS_RS08245 0.54 +0.9
1,758,271 - RS_RS08245 0.59 +1.8
1,758,271 - RS_RS08245 0.59 -0.3
1,758,502 - RS_RS08245 0.76 -1.1
1,758,726 + -0.1
1,758,884 + -0.9
1,758,884 + -1.0
1,758,886 + +0.1
1,759,121 + RS_RS08250 0.16 -0.1
1,759,122 - RS_RS08250 0.17 +0.7
1,759,122 - RS_RS08250 0.17 +1.0
1,759,122 - RS_RS08250 0.17 -1.6

Or see this region's nucleotide sequence