Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22875

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22870 and RS_RS22875 are separated by 26 nucleotidesRS_RS22875 and RS_RS22880 are separated by 33 nucleotides RS_RS22870: RS_RS22870 - permease, at 1,510,864 to 1,512,216 _RS22870 RS_RS22875: RS_RS22875 - ketohydroxyglutarate aldolase, at 1,512,243 to 1,512,869 _RS22875 RS_RS22880: RS_RS22880 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,512,903 to 1,513,628 _RS22880 Position (kb) 1512 1513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1511.384 kb on - strand, within RS_RS22870at 1511.414 kb on - strand, within RS_RS22870at 1511.716 kb on + strand, within RS_RS22870at 1511.716 kb on + strand, within RS_RS22870at 1511.717 kb on - strand, within RS_RS22870at 1512.110 kb on - strandat 1513.292 kb on - strand, within RS_RS22880

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,511,384 - RS_RS22870 0.38 -0.0
1,511,414 - RS_RS22870 0.41 -0.0
1,511,716 + RS_RS22870 0.63 +0.3
1,511,716 + RS_RS22870 0.63 -0.2
1,511,717 - RS_RS22870 0.63 +0.3
1,512,110 - +0.2
1,513,292 - RS_RS22880 0.54 -3.9

Or see this region's nucleotide sequence