Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22725

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22710 and RS_RS22715 overlap by 26 nucleotidesRS_RS22715 and RS_RS22720 are separated by 206 nucleotidesRS_RS22720 and RS_RS22725 are separated by 73 nucleotidesRS_RS22725 and RS_RS22730 are separated by 135 nucleotidesRS_RS22730 and RS_RS22735 overlap by 17 nucleotides RS_RS22710: RS_RS22710 - AraC family transcriptional regulator, at 1,458,314 to 1,459,288 _RS22710 RS_RS22715: RS_RS22715 - DUF1272 domain-containing protein, at 1,459,263 to 1,459,511 _RS22715 RS_RS22720: RS_RS22720 - universal stress protein, at 1,459,718 to 1,460,158 _RS22720 RS_RS22725: RS_RS22725 - lipoprotein signal peptidase, at 1,460,232 to 1,460,759 _RS22725 RS_RS22730: RS_RS22730 - DNA-binding response regulator, at 1,460,895 to 1,461,554 _RS22730 RS_RS22735: RS_RS22735 - two-component sensor histidine kinase, at 1,461,538 to 1,463,076 _RS22735 Position (kb) 1460 1461Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1459.341 kb on + strand, within RS_RS22715at 1459.341 kb on + strand, within RS_RS22715at 1459.341 kb on + strand, within RS_RS22715at 1459.342 kb on - strand, within RS_RS22715at 1459.342 kb on - strand, within RS_RS22715at 1459.342 kb on - strand, within RS_RS22715at 1459.342 kb on - strand, within RS_RS22715at 1459.342 kb on - strand, within RS_RS22715at 1459.685 kb on + strandat 1459.823 kb on + strand, within RS_RS22720at 1459.823 kb on + strand, within RS_RS22720at 1459.823 kb on + strand, within RS_RS22720at 1459.824 kb on - strand, within RS_RS22720at 1459.824 kb on - strand, within RS_RS22720at 1459.824 kb on - strand, within RS_RS22720at 1459.824 kb on - strand, within RS_RS22720at 1459.825 kb on + strand, within RS_RS22720at 1459.825 kb on + strand, within RS_RS22720at 1459.825 kb on + strand, within RS_RS22720at 1459.826 kb on - strand, within RS_RS22720at 1459.826 kb on - strand, within RS_RS22720at 1459.826 kb on - strand, within RS_RS22720at 1459.826 kb on - strand, within RS_RS22720at 1459.884 kb on - strand, within RS_RS22720at 1459.892 kb on + strand, within RS_RS22720at 1459.893 kb on - strand, within RS_RS22720at 1459.893 kb on - strand, within RS_RS22720at 1459.893 kb on - strand, within RS_RS22720at 1459.893 kb on - strand, within RS_RS22720at 1459.927 kb on + strand, within RS_RS22720at 1459.927 kb on + strand, within RS_RS22720at 1459.928 kb on - strand, within RS_RS22720at 1460.003 kb on + strand, within RS_RS22720at 1460.003 kb on + strand, within RS_RS22720at 1460.003 kb on + strand, within RS_RS22720at 1460.118 kb on + strandat 1460.119 kb on - strandat 1460.126 kb on + strandat 1460.126 kb on + strandat 1460.150 kb on + strandat 1460.150 kb on + strandat 1460.151 kb on - strandat 1460.233 kb on + strandat 1460.234 kb on - strandat 1460.234 kb on - strandat 1460.234 kb on - strandat 1460.234 kb on - strandat 1460.432 kb on - strand, within RS_RS22725at 1460.432 kb on - strand, within RS_RS22725at 1460.519 kb on - strand, within RS_RS22725at 1460.686 kb on + strand, within RS_RS22725at 1460.687 kb on - strand, within RS_RS22725at 1460.772 kb on + strandat 1460.773 kb on - strandat 1460.994 kb on - strand, within RS_RS22730at 1461.032 kb on - strand, within RS_RS22730at 1461.151 kb on + strand, within RS_RS22730at 1461.152 kb on - strand, within RS_RS22730at 1461.268 kb on + strand, within RS_RS22730at 1461.269 kb on - strand, within RS_RS22730at 1461.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,459,341 + RS_RS22715 0.31 +0.0
1,459,341 + RS_RS22715 0.31 +1.5
1,459,341 + RS_RS22715 0.31 -1.7
1,459,342 - RS_RS22715 0.32 -0.1
1,459,342 - RS_RS22715 0.32 -0.8
1,459,342 - RS_RS22715 0.32 -1.7
1,459,342 - RS_RS22715 0.32 -1.1
1,459,342 - RS_RS22715 0.32 +2.5
1,459,685 + -1.1
1,459,823 + RS_RS22720 0.24 +0.2
1,459,823 + RS_RS22720 0.24 +0.0
1,459,823 + RS_RS22720 0.24 -0.1
1,459,824 - RS_RS22720 0.24 -0.5
1,459,824 - RS_RS22720 0.24 -0.1
1,459,824 - RS_RS22720 0.24 +4.1
1,459,824 - RS_RS22720 0.24 +0.1
1,459,825 + RS_RS22720 0.24 +0.2
1,459,825 + RS_RS22720 0.24 -0.2
1,459,825 + RS_RS22720 0.24 +0.3
1,459,826 - RS_RS22720 0.24 +0.0
1,459,826 - RS_RS22720 0.24 -0.3
1,459,826 - RS_RS22720 0.24 +0.5
1,459,826 - RS_RS22720 0.24 -0.9
1,459,884 - RS_RS22720 0.38 -0.5
1,459,892 + RS_RS22720 0.39 -1.5
1,459,893 - RS_RS22720 0.40 -0.1
1,459,893 - RS_RS22720 0.40 -1.6
1,459,893 - RS_RS22720 0.40 -0.6
1,459,893 - RS_RS22720 0.40 +0.5
1,459,927 + RS_RS22720 0.47 -0.1
1,459,927 + RS_RS22720 0.47 +0.5
1,459,928 - RS_RS22720 0.48 -0.1
1,460,003 + RS_RS22720 0.65 -0.7
1,460,003 + RS_RS22720 0.65 +0.1
1,460,003 + RS_RS22720 0.65 -0.8
1,460,118 + -0.7
1,460,119 - -0.1
1,460,126 + -1.3
1,460,126 + -0.6
1,460,150 + -0.6
1,460,150 + -0.1
1,460,151 - -0.9
1,460,233 + +0.5
1,460,234 - +1.8
1,460,234 - -0.1
1,460,234 - +0.3
1,460,234 - -0.5
1,460,432 - RS_RS22725 0.38 +0.5
1,460,432 - RS_RS22725 0.38 +0.5
1,460,519 - RS_RS22725 0.54 +0.4
1,460,686 + RS_RS22725 0.86 +0.9
1,460,687 - RS_RS22725 0.86 -0.7
1,460,772 + +1.3
1,460,773 - -0.5
1,460,994 - RS_RS22730 0.15 +0.3
1,461,032 - RS_RS22730 0.21 -1.5
1,461,151 + RS_RS22730 0.39 +0.3
1,461,152 - RS_RS22730 0.39 -0.5
1,461,268 + RS_RS22730 0.57 +0.6
1,461,269 - RS_RS22730 0.57 -2.2
1,461,503 - +0.2

Or see this region's nucleotide sequence