Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22520

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22510 and RS_RS22515 are separated by 48 nucleotidesRS_RS22515 and RS_RS22520 are separated by 77 nucleotidesRS_RS22520 and RS_RS22525 are separated by 66 nucleotidesRS_RS22525 and RS_RS22530 are separated by 291 nucleotides RS_RS22510: RS_RS22510 - hypothetical protein, at 1,415,462 to 1,416,139 _RS22510 RS_RS22515: RS_RS22515 - DUF2000 domain-containing protein, at 1,416,188 to 1,416,595 _RS22515 RS_RS22520: RS_RS22520 - transcriptional regulator, at 1,416,673 to 1,417,161 _RS22520 RS_RS22525: RS_RS22525 - hypothetical protein, at 1,417,228 to 1,417,725 _RS22525 RS_RS22530: RS_RS22530 - TetR/AcrR family transcriptional regulator, at 1,418,017 to 1,418,610 _RS22530 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -1 0 1 2 3 4at 1415.687 kb on + strand, within RS_RS22510at 1415.709 kb on + strand, within RS_RS22510at 1415.709 kb on + strand, within RS_RS22510at 1415.709 kb on + strand, within RS_RS22510at 1415.709 kb on + strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.710 kb on - strand, within RS_RS22510at 1415.760 kb on + strand, within RS_RS22510at 1415.761 kb on - strand, within RS_RS22510at 1415.761 kb on - strand, within RS_RS22510at 1416.147 kb on - strandat 1416.157 kb on + strandat 1416.157 kb on + strandat 1416.158 kb on - strandat 1416.158 kb on - strandat 1416.158 kb on - strandat 1416.340 kb on + strand, within RS_RS22515at 1416.341 kb on - strand, within RS_RS22515at 1416.342 kb on + strand, within RS_RS22515at 1416.343 kb on - strand, within RS_RS22515at 1416.343 kb on - strand, within RS_RS22515at 1416.343 kb on - strand, within RS_RS22515at 1416.343 kb on - strand, within RS_RS22515at 1416.343 kb on - strand, within RS_RS22515at 1416.448 kb on - strand, within RS_RS22515at 1416.509 kb on - strand, within RS_RS22515at 1416.578 kb on + strandat 1416.579 kb on - strandat 1416.586 kb on + strandat 1416.587 kb on - strandat 1416.893 kb on + strand, within RS_RS22520at 1416.893 kb on + strand, within RS_RS22520at 1416.893 kb on + strand, within RS_RS22520at 1416.951 kb on - strand, within RS_RS22520at 1416.951 kb on - strand, within RS_RS22520at 1417.054 kb on + strand, within RS_RS22520at 1417.125 kb on + strandat 1417.192 kb on + strandat 1417.197 kb on + strandat 1417.197 kb on + strandat 1417.198 kb on - strandat 1417.198 kb on - strandat 1417.198 kb on - strandat 1417.198 kb on - strandat 1417.227 kb on + strandat 1417.357 kb on + strand, within RS_RS22525at 1417.357 kb on + strand, within RS_RS22525at 1417.358 kb on - strand, within RS_RS22525at 1417.583 kb on + strand, within RS_RS22525at 1417.583 kb on + strand, within RS_RS22525at 1417.583 kb on + strand, within RS_RS22525at 1417.584 kb on - strand, within RS_RS22525at 1417.584 kb on - strand, within RS_RS22525at 1417.584 kb on - strand, within RS_RS22525at 1417.584 kb on - strand, within RS_RS22525at 1417.723 kb on + strandat 1417.875 kb on + strandat 1417.875 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,415,687 + RS_RS22510 0.33 +0.1
1,415,709 + RS_RS22510 0.36 -0.0
1,415,709 + RS_RS22510 0.36 -0.1
1,415,709 + RS_RS22510 0.36 +0.5
1,415,709 + RS_RS22510 0.36 -0.5
1,415,710 - RS_RS22510 0.37 +0.5
1,415,710 - RS_RS22510 0.37 +0.4
1,415,710 - RS_RS22510 0.37 +0.5
1,415,710 - RS_RS22510 0.37 -0.1
1,415,710 - RS_RS22510 0.37 +0.6
1,415,710 - RS_RS22510 0.37 -0.3
1,415,710 - RS_RS22510 0.37 +0.1
1,415,760 + RS_RS22510 0.44 +1.2
1,415,761 - RS_RS22510 0.44 -0.1
1,415,761 - RS_RS22510 0.44 +1.5
1,416,147 - -0.5
1,416,157 + -0.5
1,416,157 + +0.5
1,416,158 - -0.2
1,416,158 - +0.5
1,416,158 - +0.5
1,416,340 + RS_RS22515 0.37 -0.1
1,416,341 - RS_RS22515 0.38 +0.5
1,416,342 + RS_RS22515 0.38 -0.8
1,416,343 - RS_RS22515 0.38 -0.1
1,416,343 - RS_RS22515 0.38 -1.0
1,416,343 - RS_RS22515 0.38 +1.5
1,416,343 - RS_RS22515 0.38 -1.7
1,416,343 - RS_RS22515 0.38 -1.1
1,416,448 - RS_RS22515 0.64 +1.5
1,416,509 - RS_RS22515 0.79 -0.0
1,416,578 + +0.5
1,416,579 - +0.1
1,416,586 + -1.4
1,416,587 - +0.3
1,416,893 + RS_RS22520 0.45 -0.2
1,416,893 + RS_RS22520 0.45 +0.1
1,416,893 + RS_RS22520 0.45 +1.5
1,416,951 - RS_RS22520 0.57 +0.5
1,416,951 - RS_RS22520 0.57 +0.4
1,417,054 + RS_RS22520 0.78 +0.2
1,417,125 + +0.5
1,417,192 + +0.6
1,417,197 + +0.5
1,417,197 + +1.5
1,417,198 - -0.1
1,417,198 - +0.3
1,417,198 - -1.1
1,417,198 - +0.5
1,417,227 + +0.3
1,417,357 + RS_RS22525 0.26 +0.2
1,417,357 + RS_RS22525 0.26 -0.1
1,417,358 - RS_RS22525 0.26 +2.1
1,417,583 + RS_RS22525 0.71 -0.5
1,417,583 + RS_RS22525 0.71 +0.5
1,417,583 + RS_RS22525 0.71 -1.3
1,417,584 - RS_RS22525 0.71 -0.0
1,417,584 - RS_RS22525 0.71 +4.6
1,417,584 - RS_RS22525 0.71 -0.9
1,417,584 - RS_RS22525 0.71 +0.5
1,417,723 + +1.5
1,417,875 + +0.3
1,417,875 + -0.1

Or see this region's nucleotide sequence