Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20115 and RS_RS20120 overlap by 4 nucleotides RS_RS20120 and RS_RS20125 overlap by 4 nucleotides RS_RS20125 and RS_RS20130 are separated by 620 nucleotides
RS_RS20115: RS_RS20115 - cobaltochelatase, at 759,332 to 763,471
_RS20115
RS_RS20120: RS_RS20120 - ferredoxin protein, at 763,468 to 763,797
_RS20120
RS_RS20125: RS_RS20125 - HoxN/HupN/NixA family nickel/cobalt transporter, at 763,794 to 764,867
_RS20125
RS_RS20130: RS_RS20130 - type VI secretion system tip protein VgrG, at 765,488 to 768,361
_RS20130
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 762.812 kb on - strand, within RS_RS20115 at 762.813 kb on + strand, within RS_RS20115 at 762.813 kb on + strand, within RS_RS20115 at 762.814 kb on - strand, within RS_RS20115 at 762.814 kb on - strand, within RS_RS20115 at 762.903 kb on + strand, within RS_RS20115 at 762.990 kb on + strand, within RS_RS20115 at 762.990 kb on + strand, within RS_RS20115 at 762.990 kb on + strand, within RS_RS20115 at 762.991 kb on - strand, within RS_RS20115 at 762.991 kb on - strand, within RS_RS20115 at 762.991 kb on - strand, within RS_RS20115 at 763.108 kb on - strand at 763.460 kb on + strand at 763.596 kb on - strand, within RS_RS20120 at 763.614 kb on - strand, within RS_RS20120 at 763.852 kb on + strand at 763.852 kb on + strand at 763.853 kb on - strand at 763.903 kb on + strand, within RS_RS20125 at 763.904 kb on - strand, within RS_RS20125 at 763.904 kb on - strand, within RS_RS20125 at 764.053 kb on + strand, within RS_RS20125 at 764.053 kb on + strand, within RS_RS20125 at 764.054 kb on - strand, within RS_RS20125 at 764.093 kb on - strand, within RS_RS20125 at 764.701 kb on + strand, within RS_RS20125 at 764.871 kb on + strand at 764.871 kb on + strand at 764.871 kb on + strand at 764.871 kb on + strand at 764.871 kb on + strand at 764.871 kb on + strand at 764.871 kb on + strand at 764.872 kb on - strand at 764.872 kb on - strand at 764.872 kb on - strand at 764.872 kb on - strand at 765.066 kb on + strand at 765.066 kb on + strand at 765.066 kb on + strand at 765.067 kb on - strand at 765.067 kb on - strand at 765.147 kb on + strand at 765.147 kb on + strand at 765.147 kb on + strand at 765.148 kb on - strand at 765.148 kb on - strand at 765.324 kb on + strand at 765.324 kb on + strand at 765.324 kb on + strand at 765.325 kb on - strand at 765.373 kb on - strand at 765.448 kb on + strand at 765.487 kb on + strand at 765.638 kb on + strand at 765.638 kb on + strand at 765.638 kb on + strand at 765.639 kb on - strand at 765.720 kb on + strand at 765.720 kb on + strand at 765.720 kb on + strand at 765.721 kb on - strand at 765.740 kb on + strand at 765.740 kb on + strand at 765.741 kb on - strand at 765.741 kb on - strand at 765.741 kb on - strand at 765.759 kb on - strand at 765.759 kb on - strand at 765.759 kb on - strand at 765.807 kb on + strand, within RS_RS20130 at 765.808 kb on - strand, within RS_RS20130
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 762,812 - RS_RS20115 0.84 -0.5 762,813 + RS_RS20115 0.84 -0.2 762,813 + RS_RS20115 0.84 -0.9 762,814 - RS_RS20115 0.84 -0.4 762,814 - RS_RS20115 0.84 +1.4 762,903 + RS_RS20115 0.86 +0.3 762,990 + RS_RS20115 0.88 -0.2 762,990 + RS_RS20115 0.88 -2.2 762,990 + RS_RS20115 0.88 -1.2 762,991 - RS_RS20115 0.88 -0.1 762,991 - RS_RS20115 0.88 -0.4 762,991 - RS_RS20115 0.88 +0.4 763,108 - -0.7 763,460 + +0.2 763,596 - RS_RS20120 0.39 -1.4 763,614 - RS_RS20120 0.44 -0.9 763,852 + +0.4 763,852 + -0.5 763,853 - +1.3 763,903 + RS_RS20125 0.10 -1.0 763,904 - RS_RS20125 0.10 +0.4 763,904 - RS_RS20125 0.10 -2.5 764,053 + RS_RS20125 0.24 +0.2 764,053 + RS_RS20125 0.24 -0.2 764,054 - RS_RS20125 0.24 -0.6 764,093 - RS_RS20125 0.28 +1.4 764,701 + RS_RS20125 0.84 -0.0 764,871 + -0.6 764,871 + -1.4 764,871 + -0.1 764,871 + +0.2 764,871 + -0.7 764,871 + -0.3 764,871 + -1.2 764,872 - -0.0 764,872 - +1.4 764,872 - -0.6 764,872 - -0.2 765,066 + +0.0 765,066 + -0.3 765,066 + +0.3 765,067 - -0.0 765,067 - -1.1 765,147 + -0.3 765,147 + +0.1 765,147 + +0.4 765,148 - -0.4 765,148 - -0.6 765,324 + -0.7 765,324 + +0.7 765,324 + -0.2 765,325 - -0.3 765,373 - +0.6 765,448 + +1.4 765,487 + +1.4 765,638 + -0.2 765,638 + +0.1 765,638 + +0.9 765,639 - +1.4 765,720 + -0.1 765,720 + -0.5 765,720 + -0.8 765,721 - -0.9 765,740 + +0.2 765,740 + -3.4 765,741 - -0.9 765,741 - -1.6 765,741 - -0.7 765,759 - -0.4 765,759 - +0.1 765,759 - +0.8 765,807 + RS_RS20130 0.11 -0.9 765,808 - RS_RS20130 0.11 -0.6
Or see this region's nucleotide sequence