Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17255 and RS_RS17260 are separated by 481 nucleotides RS_RS17260 and RS_RS17265 are separated by 96 nucleotides RS_RS17265 and RS_RS17270 are separated by 10 nucleotides
RS_RS17255: RS_RS17255 - PAS domain S-box protein, at 14,151 to 16,847
_RS17255
RS_RS17260: RS_RS17260 - amino acid ABC transporter substrate-binding protein, at 17,329 to 18,489
_RS17260
RS_RS17265: RS_RS17265 - branched-chain amino acid ABC transporter permease, at 18,586 to 19,467
_RS17265
RS_RS17270: RS_RS17270 - branched-chain amino acid ABC transporter permease, at 19,478 to 20,377
_RS17270
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.470 kb on - strand, within RS_RS17255 at 16.770 kb on + strand at 16.770 kb on + strand at 16.770 kb on + strand at 16.771 kb on - strand at 17.100 kb on - strand at 17.100 kb on - strand at 17.312 kb on - strand at 17.842 kb on + strand, within RS_RS17260 at 17.842 kb on + strand, within RS_RS17260 at 17.842 kb on + strand, within RS_RS17260 at 17.843 kb on - strand, within RS_RS17260 at 17.843 kb on - strand, within RS_RS17260 at 18.209 kb on - strand, within RS_RS17260 at 18.220 kb on + strand, within RS_RS17260 at 18.220 kb on + strand, within RS_RS17260 at 18.220 kb on + strand, within RS_RS17260 at 18.220 kb on + strand, within RS_RS17260 at 18.221 kb on - strand, within RS_RS17260 at 18.221 kb on - strand, within RS_RS17260 at 18.256 kb on + strand, within RS_RS17260 at 18.256 kb on + strand, within RS_RS17260 at 18.257 kb on - strand, within RS_RS17260 at 18.472 kb on + strand at 18.472 kb on + strand at 18.487 kb on + strand at 18.487 kb on + strand at 18.524 kb on + strand at 18.524 kb on + strand at 18.524 kb on + strand at 18.524 kb on + strand at 18.525 kb on - strand at 18.525 kb on - strand at 18.631 kb on + strand at 18.631 kb on + strand at 18.631 kb on + strand at 18.632 kb on - strand at 18.632 kb on - strand at 19.217 kb on - strand, within RS_RS17265 at 19.360 kb on + strand, within RS_RS17265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 16,470 - RS_RS17255 0.86 +1.8 16,770 + -0.5 16,770 + -1.8 16,770 + -1.1 16,771 - +1.3 17,100 - -0.3 17,100 - +0.3 17,312 - -0.6 17,842 + RS_RS17260 0.44 +0.4 17,842 + RS_RS17260 0.44 +0.2 17,842 + RS_RS17260 0.44 -1.2 17,843 - RS_RS17260 0.44 -1.4 17,843 - RS_RS17260 0.44 +0.8 18,209 - RS_RS17260 0.76 -0.4 18,220 + RS_RS17260 0.77 -0.2 18,220 + RS_RS17260 0.77 -1.6 18,220 + RS_RS17260 0.77 +0.5 18,220 + RS_RS17260 0.77 +0.1 18,221 - RS_RS17260 0.77 -0.4 18,221 - RS_RS17260 0.77 -1.2 18,256 + RS_RS17260 0.80 -0.1 18,256 + RS_RS17260 0.80 -0.0 18,257 - RS_RS17260 0.80 -0.8 18,472 + -0.9 18,472 + -0.6 18,487 + +0.8 18,487 + +0.2 18,524 + -0.5 18,524 + -0.4 18,524 + -0.2 18,524 + +0.6 18,525 - +0.5 18,525 - +0.2 18,631 + +0.5 18,631 + -1.0 18,631 + +0.6 18,632 - +0.2 18,632 - -0.1 19,217 - RS_RS17265 0.72 +0.1 19,360 + RS_RS17265 0.88 +0.1
Or see this region's nucleotide sequence