Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16965

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16960 and RS_RS16965 are separated by 179 nucleotidesRS_RS16965 and RS_RS16970 are separated by 36 nucleotides RS_RS16960: RS_RS16960 - sensor histidine kinase KdpD, at 3,646,636 to 3,649,449 _RS16960 RS_RS16965: RS_RS16965 - metal ABC transporter substrate-binding protein, at 3,649,629 to 3,650,375 _RS16965 RS_RS16970: RS_RS16970 - MetQ/NlpA family lipoprotein, at 3,650,412 to 3,651,218 _RS16970 Position (kb) 3649 3650 3651Strain fitness (log2 ratio) -1 0 1at 3648.694 kb on + strand, within RS_RS16960at 3648.694 kb on + strand, within RS_RS16960at 3648.695 kb on - strand, within RS_RS16960at 3648.695 kb on - strand, within RS_RS16960at 3648.695 kb on - strand, within RS_RS16960at 3649.513 kb on - strandat 3651.227 kb on + strandat 3651.267 kb on - strandat 3651.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,648,694 + RS_RS16960 0.73 +0.2
3,648,694 + RS_RS16960 0.73 -0.4
3,648,695 - RS_RS16960 0.73 -0.9
3,648,695 - RS_RS16960 0.73 +0.0
3,648,695 - RS_RS16960 0.73 -0.1
3,649,513 - -0.5
3,651,227 + +0.6
3,651,267 - -1.2
3,651,332 + +0.0

Or see this region's nucleotide sequence