Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06350

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06340 and RS_RS06345 are separated by 11 nucleotidesRS_RS06345 and RS_RS06350 are separated by 30 nucleotidesRS_RS06350 and RS_RS06355 overlap by 4 nucleotides RS_RS06340: RS_RS06340 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 1,344,710 to 1,345,591 _RS06340 RS_RS06345: RS_RS06345 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 1,345,603 to 1,346,451 _RS06345 RS_RS06350: RS_RS06350 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 1,346,482 to 1,347,579 _RS06350 RS_RS06355: RS_RS06355 - glycerophosphodiester phosphodiesterase, at 1,347,576 to 1,348,334 _RS06355 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -2 -1 0 1at 1345.586 kb on + strandat 1345.912 kb on + strand, within RS_RS06345at 1345.913 kb on - strand, within RS_RS06345at 1345.999 kb on + strand, within RS_RS06345at 1346.000 kb on - strand, within RS_RS06345at 1346.246 kb on - strand, within RS_RS06345at 1346.498 kb on + strandat 1347.046 kb on + strand, within RS_RS06350at 1347.046 kb on + strand, within RS_RS06350at 1347.046 kb on + strand, within RS_RS06350at 1347.145 kb on + strand, within RS_RS06350at 1347.146 kb on - strand, within RS_RS06350at 1347.430 kb on + strand, within RS_RS06350at 1347.430 kb on + strand, within RS_RS06350at 1347.431 kb on - strand, within RS_RS06350at 1348.233 kb on + strand, within RS_RS06355at 1348.233 kb on + strand, within RS_RS06355at 1348.369 kb on + strandat 1348.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,345,586 + -0.2
1,345,912 + RS_RS06345 0.36 +1.4
1,345,913 - RS_RS06345 0.37 +1.2
1,345,999 + RS_RS06345 0.47 -0.6
1,346,000 - RS_RS06345 0.47 -0.3
1,346,246 - RS_RS06345 0.76 +0.2
1,346,498 + +0.1
1,347,046 + RS_RS06350 0.51 +0.4
1,347,046 + RS_RS06350 0.51 -0.8
1,347,046 + RS_RS06350 0.51 -0.5
1,347,145 + RS_RS06350 0.60 -2.2
1,347,146 - RS_RS06350 0.60 -0.4
1,347,430 + RS_RS06350 0.86 -0.2
1,347,430 + RS_RS06350 0.86 -0.1
1,347,431 - RS_RS06350 0.86 -1.0
1,348,233 + RS_RS06355 0.87 -0.4
1,348,233 + RS_RS06355 0.87 +0.8
1,348,369 + +0.2
1,348,369 + -0.6

Or see this region's nucleotide sequence