Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS21405

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS21395 and RS_RS21400 overlap by 4 nucleotidesRS_RS21400 and RS_RS21405 overlap by 4 nucleotidesRS_RS21405 and RS_RS21410 overlap by 10 nucleotidesRS_RS21410 and RS_RS21415 overlap by 17 nucleotides RS_RS21395: RS_RS21395 - 2-hydroxymuconic semialdehyde dehydrogenase, at 1,127,111 to 1,128,577 _RS21395 RS_RS21400: RS_RS21400 - 2-keto-4-pentenoate hydratase, at 1,128,574 to 1,129,371 _RS21400 RS_RS21405: RS_RS21405 - 4-oxalocrotonate decarboxylase, at 1,129,368 to 1,130,159 _RS21405 RS_RS21410: RS_RS21410 - tautomerase, at 1,130,150 to 1,130,362 _RS21410 RS_RS21415: RS_RS21415 - acetaldehyde dehydrogenase, at 1,130,346 to 1,131,266 _RS21415 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.371 kb on + strand, within RS_RS21395at 1128.371 kb on + strand, within RS_RS21395at 1128.373 kb on + strand, within RS_RS21395at 1128.374 kb on - strand, within RS_RS21395at 1128.530 kb on + strandat 1128.662 kb on - strand, within RS_RS21400at 1129.476 kb on + strand, within RS_RS21405at 1129.477 kb on - strand, within RS_RS21405at 1129.788 kb on + strand, within RS_RS21405at 1129.789 kb on - strand, within RS_RS21405at 1129.789 kb on - strand, within RS_RS21405at 1130.361 kb on - strandat 1130.452 kb on + strand, within RS_RS21415at 1130.453 kb on - strand, within RS_RS21415at 1130.670 kb on + strand, within RS_RS21415at 1130.670 kb on + strand, within RS_RS21415at 1130.794 kb on - strand, within RS_RS21415at 1130.794 kb on - strand, within RS_RS21415at 1131.048 kb on + strand, within RS_RS21415at 1131.048 kb on + strand, within RS_RS21415at 1131.048 kb on + strand, within RS_RS21415at 1131.049 kb on - strand, within RS_RS21415

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,128,371 + RS_RS21395 0.86 +0.2
1,128,371 + RS_RS21395 0.86 +0.7
1,128,373 + RS_RS21395 0.86 +0.4
1,128,374 - RS_RS21395 0.86 +0.4
1,128,530 + -0.5
1,128,662 - RS_RS21400 0.11 -0.2
1,129,476 + RS_RS21405 0.14 +0.1
1,129,477 - RS_RS21405 0.14 -0.5
1,129,788 + RS_RS21405 0.53 -0.3
1,129,789 - RS_RS21405 0.53 +0.4
1,129,789 - RS_RS21405 0.53 -0.3
1,130,361 - +0.3
1,130,452 + RS_RS21415 0.12 -0.5
1,130,453 - RS_RS21415 0.12 -1.2
1,130,670 + RS_RS21415 0.35 -2.5
1,130,670 + RS_RS21415 0.35 -0.3
1,130,794 - RS_RS21415 0.49 +1.8
1,130,794 - RS_RS21415 0.49 -0.8
1,131,048 + RS_RS21415 0.76 -1.0
1,131,048 + RS_RS21415 0.76 +0.5
1,131,048 + RS_RS21415 0.76 -0.4
1,131,049 - RS_RS21415 0.76 +1.0

Or see this region's nucleotide sequence