Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20070

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20060 and RS_RS20065 overlap by 4 nucleotidesRS_RS20065 and RS_RS20070 are separated by 31 nucleotidesRS_RS20070 and RS_RS20075 are separated by 4 nucleotides RS_RS20060: RS_RS20060 - cobyrinate a,c-diamide synthase, at 746,394 to 747,716 _RS20060 RS_RS20065: RS_RS20065 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 747,713 to 748,315 _RS20065 RS_RS20070: RS_RS20070 - GTP-binding protein, at 748,347 to 749,450 _RS20070 RS_RS20075: RS_RS20075 - bifunctional precorrin-3 methyltransferase/precorrin-6x reductase, at 749,455 to 751,014 _RS20075 Position (kb) 748 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 747.460 kb on + strand, within RS_RS20060at 747.542 kb on + strand, within RS_RS20060at 747.542 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.544 kb on + strand, within RS_RS20060at 747.545 kb on - strand, within RS_RS20060at 747.556 kb on + strand, within RS_RS20060at 747.557 kb on - strand, within RS_RS20060at 747.897 kb on + strand, within RS_RS20065at 747.898 kb on - strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.903 kb on + strand, within RS_RS20065at 747.904 kb on - strand, within RS_RS20065at 747.904 kb on - strand, within RS_RS20065at 747.916 kb on + strand, within RS_RS20065at 747.917 kb on - strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.035 kb on + strand, within RS_RS20065at 748.036 kb on - strand, within RS_RS20065at 748.036 kb on - strand, within RS_RS20065at 748.775 kb on - strand, within RS_RS20070at 748.775 kb on - strand, within RS_RS20070at 749.236 kb on + strand, within RS_RS20070at 749.535 kb on - strandat 749.954 kb on + strand, within RS_RS20075at 750.011 kb on + strand, within RS_RS20075at 750.308 kb on + strand, within RS_RS20075at 750.308 kb on + strand, within RS_RS20075at 750.308 kb on + strand, within RS_RS20075at 750.309 kb on - strand, within RS_RS20075at 750.309 kb on - strand, within RS_RS20075at 750.309 kb on - strand, within RS_RS20075

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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747,460 + RS_RS20060 0.81 -0.4
747,542 + RS_RS20060 0.87 +0.3
747,542 + RS_RS20060 0.87 -0.4
747,544 + RS_RS20060 0.87 +0.6
747,544 + RS_RS20060 0.87 -0.6
747,544 + RS_RS20060 0.87 +0.5
747,544 + RS_RS20060 0.87 -0.1
747,544 + RS_RS20060 0.87 -0.5
747,544 + RS_RS20060 0.87 -0.1
747,545 - RS_RS20060 0.87 -2.7
747,556 + RS_RS20060 0.88 +0.3
747,557 - RS_RS20060 0.88 +0.9
747,897 + RS_RS20065 0.31 +0.1
747,898 - RS_RS20065 0.31 -0.9
747,903 + RS_RS20065 0.32 -0.4
747,903 + RS_RS20065 0.32 -1.4
747,903 + RS_RS20065 0.32 -0.2
747,903 + RS_RS20065 0.32 -1.1
747,903 + RS_RS20065 0.32 -2.1
747,904 - RS_RS20065 0.32 -0.7
747,904 - RS_RS20065 0.32 -1.7
747,916 + RS_RS20065 0.34 +0.3
747,917 - RS_RS20065 0.34 -0.1
748,035 + RS_RS20065 0.53 -0.7
748,035 + RS_RS20065 0.53 +1.6
748,035 + RS_RS20065 0.53 -0.8
748,036 - RS_RS20065 0.54 +0.7
748,036 - RS_RS20065 0.54 -0.1
748,775 - RS_RS20070 0.39 +0.6
748,775 - RS_RS20070 0.39 -0.1
749,236 + RS_RS20070 0.81 -0.1
749,535 - +0.6
749,954 + RS_RS20075 0.32 -0.7
750,011 + RS_RS20075 0.36 -0.1
750,308 + RS_RS20075 0.55 +0.7
750,308 + RS_RS20075 0.55 -0.7
750,308 + RS_RS20075 0.55 +0.4
750,309 - RS_RS20075 0.55 -0.7
750,309 - RS_RS20075 0.55 +1.9
750,309 - RS_RS20075 0.55 +0.2

Or see this region's nucleotide sequence