Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13375

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13365 and RS_RS13370 overlap by 4 nucleotidesRS_RS13370 and RS_RS13375 are separated by 158 nucleotidesRS_RS13375 and RS_RS13380 are separated by 50 nucleotidesRS_RS13380 and RS_RS13385 are separated by 42 nucleotides RS_RS13365: RS_RS13365 - CidA/LrgA family protein, at 2,879,662 to 2,880,039 _RS13365 RS_RS13370: RS_RS13370 - LrgB family protein, at 2,880,036 to 2,880,758 _RS13370 RS_RS13375: RS_RS13375 - VOC family protein, at 2,880,917 to 2,881,312 _RS13375 RS_RS13380: RS_RS13380 - cupin domain-containing protein, at 2,881,363 to 2,881,842 _RS13380 RS_RS13385: RS_RS13385 - YafY family transcriptional regulator, at 2,881,885 to 2,882,583 _RS13385 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -1 0 1 2 3at 2880.067 kb on - strandat 2880.114 kb on + strand, within RS_RS13370at 2880.136 kb on - strand, within RS_RS13370at 2880.234 kb on + strand, within RS_RS13370at 2880.591 kb on + strand, within RS_RS13370at 2880.658 kb on + strand, within RS_RS13370at 2880.658 kb on + strand, within RS_RS13370at 2881.124 kb on + strand, within RS_RS13375at 2881.125 kb on - strand, within RS_RS13375at 2881.576 kb on + strand, within RS_RS13380at 2881.576 kb on + strand, within RS_RS13380at 2881.576 kb on + strand, within RS_RS13380at 2881.577 kb on - strand, within RS_RS13380at 2881.577 kb on - strand, within RS_RS13380at 2881.577 kb on - strand, within RS_RS13380at 2881.577 kb on - strand, within RS_RS13380at 2881.577 kb on - strand, within RS_RS13380at 2881.840 kb on + strandat 2881.881 kb on + strandat 2881.881 kb on + strandat 2881.882 kb on - strandat 2881.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,880,067 - +2.2
2,880,114 + RS_RS13370 0.11 +0.0
2,880,136 - RS_RS13370 0.14 -0.2
2,880,234 + RS_RS13370 0.27 -1.1
2,880,591 + RS_RS13370 0.77 -0.5
2,880,658 + RS_RS13370 0.86 -0.2
2,880,658 + RS_RS13370 0.86 +0.9
2,881,124 + RS_RS13375 0.52 -0.6
2,881,125 - RS_RS13375 0.53 +0.8
2,881,576 + RS_RS13380 0.44 +0.5
2,881,576 + RS_RS13380 0.44 -0.7
2,881,576 + RS_RS13380 0.44 +2.3
2,881,577 - RS_RS13380 0.45 -1.2
2,881,577 - RS_RS13380 0.45 +3.0
2,881,577 - RS_RS13380 0.45 -1.2
2,881,577 - RS_RS13380 0.45 +0.3
2,881,577 - RS_RS13380 0.45 +0.1
2,881,840 + -0.3
2,881,881 + +0.1
2,881,881 + -0.1
2,881,882 - -0.6
2,881,882 - +0.1

Or see this region's nucleotide sequence